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edamontology / edamontology

EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.
https://edamontology.org
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Missing "BIOM" #147

Closed mlangill closed 8 years ago

matuskalas commented 8 years ago

This clearly sounds like nonsense, because

matuskalas commented 8 years ago

BIOM table: http://biom-format.org/documentation/table_objects.html

matuskalas commented 8 years ago

BIOM format (http://edamontology.org/format_3746) added instead into the development version towards release 1.15 (See #172). It is a format of a Biodiversity report (http://edamontology.org/data_3707). The latter should be used when annotating "OTU tables" or "BIOM tables" as types of data. In more specific cases, Alpha, Beta, or Gamma diversity data can be used (http://edamontology.org/data_3737, http://edamontology.org/data_3738, http://edamontology.org/data_3739, corrected in f886147c975315f2345b12963a839d97264e15d2). OTU table has been added as a narrow synonym to a Biodiversity report (fixed in f63a7db71fabb1b58fadd3d1a1fc28edb60513c0).