3D EM Map, 3D EM Mask : position in hierarchy?

edamontology / edamontology

EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.

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3D EM Map, 3D EM Mask : position in hierarchy? #382

Open joncison opened 5 years ago

joncison commented 5 years ago

@jlgelpi

Currently 3D EM Map and 3D EM Mask are currently kids of Structure, which doesn't seem right.

Can you please advise - do we need a new parent concept, or are they OK where they are ?

jlgelpi commented 5 years ago

I agree, they are no "Structure". They could fit under "image", as they are secondary data from EM images, but I would prefer to have a whole data section on experimental data leading to 3D structure, together with X-Ray diffraction maps, Structure Factors, NMR experimental data, that are also missing. We need a more expert advice here.

juergen.haas@unibas.ch
carazo@cnb.csic.es

joncison commented 5 years ago

ok thanks

so I leave this open till we hear from others, we already have:

Experimental measurement -> Protein structure raw data and various kids of that (prob. needs cleaning!)

joncison commented 5 years ago

Hi @jlgelpi could I get a bit more advice here? Also from @veitveit (re NME experimental data etc.) thanks!

veitveit commented 5 years ago

There is probably more as new techniques are emerging. What about raw data from CryoEM?

I am not an expert at all here, so we would need help.