Mapping from EDAM to PSI-MS

edamontology / edamontology

EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.

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Mapping from EDAM to PSI-MS #399

Open joncison opened 5 years ago

joncison commented 5 years ago

There are some overlaps between EDAM and PSI-MS ... some operations I think, and some high-level data concepts in PSI-MS.

Produce a mapping via equivalence axioms.

This came up in context of the proteomics tools collection publication (which mentions EDAM)

joncison commented 5 years ago

@matuskalas check out their coverage of MS file formats, they have nice coverage.

we should at least crosslink to them / define equivalence statements

matuskalas commented 5 years ago

Yes sure, looks great, and we should reference them.

Using rdfs:seeAlso like in all other cases. Equivalence is too dangerous (could break some reasoning if inconsistencies beyond our control appear), and not needed in usual applications we have (special applications requiring it can easily add it programmatically whenever they need)