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edawson / gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
http://edawson.github.io/gfakluge/
MIT License
51 stars 20 forks source link

fasta -> GFA #14

Closed edawson closed 6 years ago

edawson commented 7 years ago

gfa_stats (and other utilities) rely on the file being in GFA format. A FASTA file of contigs could be converted to valid GFA containing just a header and sequence lines, allowing use of such utilities.

I wrote a small python script to do this but it should get brought into the cpp code, probably somewhere in the gfa_spec_convert CLI.

edawson commented 6 years ago

Closing, python is fine in my opinion.