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edawson / gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
http://edawson.github.io/gfakluge/
MIT License
51 stars 20 forks source link

gfak build command #32

Closed edawson closed 6 years ago

edawson commented 6 years ago

I would like to port the functionality from svaha to gfakluge. It provides a very fast way to build large variation graphs as GFA. It already outputs GFA2, but it would be nice to have it available via gfak.

edawson commented 6 years ago

todo: handle SEQ info tag for insertions, rather than going to external fasta.

edawson commented 6 years ago

I'm going to consider this "good enough", as the basic command is implemented. Folks looking to build complex graphs should consider vg, which has good handling of all types of variation now.