When using stream, the -D <N> flag tags any reads which are not kmers different from a second reference as failing. This feature does not work on classify at the moment, even though the flag is there. I think there's something broken in the sketch comparison function.
edawson
commented
7 years ago
When using kmers different from a second reference as failing. This feature does not work on classify at the moment, even though the flag is there. I think there's something broken in the sketch comparison function.
stream, the-D <N>flag tags any reads which are not