eddelbuettel / mkl4deb

Adding the Intel MKL to a Debian / Ubuntu system via one simple script
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segmentation fault #14

Closed myoung3 closed 3 years ago

myoung3 commented 3 years ago

I'm getting a segmentation fault when trying to link a recent version of MKL on a recent version of rocker. I'm not sure if this is an issue with the sylabs remote builder or with the script itself and unfortunately I dont have easy access to ubuntu/debian machine with root to try locally. Can you advise? Here's my singularity .def file:

Bootstrap: docker
From: rocker/geospatial:4.1.0
Stage: build

############################################
%post
############################################

##intel mkl###
apt update
apt install -y gnupg2

wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB -O - > key_stored2file
apt-key add key_stored2file
rm key_stored2file
echo "deb https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list
apt update
apt install -y intel-oneapi-mkl-2021.1.1

/opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so

update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so     \
                    libblas.so-x86_64-linux-gnu      /opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3   \
                    libblas.so.3-x86_64-linux-gnu    /opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so   \
                    liblapack.so-x86_64-linux-gnu    /opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 \
                    liblapack.so.3-x86_64-linux-gnu  /opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so 50

echo "/opt/intel/lib/intel64"     >  /etc/ld.so.conf.d/mkl.conf
echo "/opt/intel/mkl/lib/intel64" >> /etc/ld.so.conf.d/mkl.conf
ldconfig

echo "MKL_THREADING_LAYER=GNU" >> /etc/environment
Build Log with segmentation fault error ``` singularity build --remote mkl.sif mkl.def INFO: Access Token Verified! INFO: Token stored in /root/.singularity/remote.yaml INFO: Remote "default" now in use. INFO: Starting build... Getting image source signatures Copying blob sha256:16ec32c2132b43494832a05f2b02f7a822479f8250c173d0ab27b3de78b2f058 Copying blob sha256:e031c1a9f2f8981caa2c98eccc68a7f37f276578570815a2a750f1a9a7a26a2b Copying blob sha256:a70855d85b62f4445418b3403977c218af39b555b9d024b0e34d854b43461a73 Copying blob sha256:ee8d56356e0a287731be50c207130a0960ec541c009ac15613f895f2f2d5278e Copying blob sha256:5d3c6fe2adc613012e5716756b9ad873b0e98761c70c1f2bbe0c0ab3c92359b4 Copying blob sha256:fc0654371b2f0535df2bda795325c8f2b561f13186a133469562b9685abc6768 Copying blob sha256:8d80cde37ed7f3a04b27909799a1e1c73fe9fafbc38699ecbc7c82d36559d6fd Copying blob sha256:4cfc1cf5c9b8960e2c477c2273d72febaf6003d9efe46601d484f2876e1193f3 Copying config sha256:7088bb9885c96e3651bac5b55ab97ad5a39f912a837acc7fc72d261107125a21 Writing manifest to image destination Storing signatures 2021/07/31 16:06:19 info unpack layer: sha256:16ec32c2132b43494832a05f2b02f7a822479f8250c173d0ab27b3de78b2f058 2021/07/31 16:06:20 info unpack layer: sha256:e031c1a9f2f8981caa2c98eccc68a7f37f276578570815a2a750f1a9a7a26a2b 2021/07/31 16:06:20 info unpack layer: sha256:a70855d85b62f4445418b3403977c218af39b555b9d024b0e34d854b43461a73 2021/07/31 16:06:29 info unpack layer: sha256:ee8d56356e0a287731be50c207130a0960ec541c009ac15613f895f2f2d5278e 2021/07/31 16:06:43 info unpack layer: sha256:5d3c6fe2adc613012e5716756b9ad873b0e98761c70c1f2bbe0c0ab3c92359b4 2021/07/31 16:06:43 info unpack layer: sha256:fc0654371b2f0535df2bda795325c8f2b561f13186a133469562b9685abc6768 2021/07/31 16:06:51 info unpack layer: sha256:8d80cde37ed7f3a04b27909799a1e1c73fe9fafbc38699ecbc7c82d36559d6fd 2021/07/31 16:07:10 info unpack layer: sha256:4cfc1cf5c9b8960e2c477c2273d72febaf6003d9efe46601d484f2876e1193f3 INFO: Running post scriptlet + apt update WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Get:1 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB] Get:2 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB] Get:3 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [989 kB] Get:4 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [785 kB] Get:5 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [432 kB] Get:6 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [30.6 kB] Get:7 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] Get:8 http://archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] Get:9 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB] Get:10 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB] Get:11 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1,275 kB] Get:12 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB] Get:13 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [478 kB] Get:14 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1,055 kB] Get:15 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [33.1 kB] Get:16 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [1,421 kB] Get:17 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [6,319 B] Get:18 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [2,668 B] Fetched 18.7 MB in 2s (7,519 kB/s) Reading package lists... Building dependency tree... Reading state information... 2 packages can be upgraded. Run 'apt list --upgradable' to see them. + apt install -y gnupg2 WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: dirmngr gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libassuan0 libksba8 libnpth0 pinentry-curses Suggested packages: dbus-user-session libpam-systemd pinentry-gnome3 tor parcimonie xloadimage scdaemon pinentry-doc The following NEW packages will be installed: dirmngr gnupg gnupg-l10n gnupg-utils gnupg2 gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libassuan0 libksba8 libnpth0 pinentry-curses 0 upgraded, 15 newly installed, 0 to remove and 2 not upgraded. Need to get 2,541 kB of archives. After this operation, 7,541 kB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:2 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpgconf amd64 2.2.19-3ubuntu2.1 [124 kB] Get:3 http://archive.ubuntu.com/ubuntu focal/main amd64 libksba8 amd64 1.3.5-2 [92.6 kB] Get:4 http://archive.ubuntu.com/ubuntu focal/main amd64 libnpth0 amd64 1.6-1 [7,736 B] Get:5 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 dirmngr amd64 2.2.19-3ubuntu2.1 [329 kB] Get:6 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gnupg-l10n all 2.2.19-3ubuntu2.1 [51.7 kB] Get:7 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gnupg-utils amd64 2.2.19-3ubuntu2.1 [480 kB] Get:8 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpg amd64 2.2.19-3ubuntu2.1 [483 kB] Get:9 http://archive.ubuntu.com/ubuntu focal/main amd64 pinentry-curses amd64 1.1.0-3build1 [36.3 kB] Get:10 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpg-agent amd64 2.2.19-3ubuntu2.1 [232 kB] Get:11 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpg-wks-client amd64 2.2.19-3ubuntu2.1 [97.6 kB] Get:12 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpg-wks-server amd64 2.2.19-3ubuntu2.1 [90.3 kB] Get:13 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gpgsm amd64 2.2.19-3ubuntu2.1 [217 kB] Get:14 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 gnupg all 2.2.19-3ubuntu2.1 [259 kB] Get:15 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 gnupg2 all 2.2.19-3ubuntu2.1 [4,584 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 2,541 kB in 1s (3,110 kB/s) Selecting previously unselected package libassuan0:amd64. (Reading database ... 58960 files and directories currently installed.) Preparing to unpack .../00-libassuan0_2.5.3-7ubuntu2_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7ubuntu2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../01-gpgconf_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpgconf (2.2.19-3ubuntu2.1) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../02-libksba8_1.3.5-2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../03-libnpth0_1.6-1_amd64.deb ... Unpacking libnpth0:amd64 (1.6-1) ... Selecting previously unselected package dirmngr. Preparing to unpack .../04-dirmngr_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking dirmngr (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../05-gnupg-l10n_2.2.19-3ubuntu2.1_all.deb ... Unpacking gnupg-l10n (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gnupg-utils. Preparing to unpack .../06-gnupg-utils_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gnupg-utils (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpg (2.2.19-3ubuntu2.1) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../08-pinentry-curses_1.1.0-3build1_amd64.deb ... Unpacking pinentry-curses (1.1.0-3build1) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../09-gpg-agent_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpg-agent (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gpg-wks-client. Preparing to unpack .../10-gpg-wks-client_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpg-wks-client (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gpg-wks-server. Preparing to unpack .../11-gpg-wks-server_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpg-wks-server (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gpgsm. Preparing to unpack .../12-gpgsm_2.2.19-3ubuntu2.1_amd64.deb ... Unpacking gpgsm (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gnupg. Preparing to unpack .../13-gnupg_2.2.19-3ubuntu2.1_all.deb ... Unpacking gnupg (2.2.19-3ubuntu2.1) ... Selecting previously unselected package gnupg2. Preparing to unpack .../14-gnupg2_2.2.19-3ubuntu2.1_all.deb ... Unpacking gnupg2 (2.2.19-3ubuntu2.1) ... Setting up libksba8:amd64 (1.3.5-2) ... Setting up libnpth0:amd64 (1.6-1) ... Setting up libassuan0:amd64 (2.5.3-7ubuntu2) ... Setting up gnupg-l10n (2.2.19-3ubuntu2.1) ... Setting up gpgconf (2.2.19-3ubuntu2.1) ... Setting up gpg (2.2.19-3ubuntu2.1) ... Setting up gnupg-utils (2.2.19-3ubuntu2.1) ... Setting up pinentry-curses (1.1.0-3build1) ... Setting up gpg-agent (2.2.19-3ubuntu2.1) ... Setting up gpgsm (2.2.19-3ubuntu2.1) ... Setting up dirmngr (2.2.19-3ubuntu2.1) ... Setting up gpg-wks-server (2.2.19-3ubuntu2.1) ... Setting up gpg-wks-client (2.2.19-3ubuntu2.1) ... Setting up gnupg (2.2.19-3ubuntu2.1) ... Setting up gnupg2 (2.2.19-3ubuntu2.1) ... Processing triggers for libc-bin (2.31-0ubuntu9.2) ... + wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB -O - --2021-07-31 16:07:37-- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB Resolving apt.repos.intel.com (apt.repos.intel.com)... 184.84.65.68, 2600:1408:8400:5ac::4b23, 2600:1408:8400:58d::4b23 Connecting to apt.repos.intel.com (apt.repos.intel.com)|184.84.65.68|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 3796 (3.7K) [binary/octet-stream] Saving to: ‘STDOUT’ 0K ... 100% 525M=0s 2021-07-31 16:07:38 (525 MB/s) - written to stdout [3796/3796] + apt-key add key_stored2file Warning: apt-key output should not be parsed (stdout is not a terminal) OK + rm key_stored2file deb https://apt.repos.intel.com/oneapi all main + + tee /etc/apt/sources.list.d/oneAPI.list echo deb https://apt.repos.intel.com/oneapi all main + apt update WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Hit:1 http://security.ubuntu.com/ubuntu focal-security InRelease Get:2 https://apt.repos.intel.com/oneapi all InRelease [4,390 B] Hit:3 http://archive.ubuntu.com/ubuntu focal InRelease Hit:4 http://archive.ubuntu.com/ubuntu focal-updates InRelease Hit:5 http://archive.ubuntu.com/ubuntu focal-backports InRelease Get:6 https://apt.repos.intel.com/oneapi all/main all Packages [16.4 kB] Get:7 https://apt.repos.intel.com/oneapi all/main amd64 Packages [84.6 kB] Fetched 105 kB in 0s (238 kB/s) Reading package lists... Building dependency tree... Reading state information... 2 packages can be upgraded. Run 'apt list --upgradable' to see them. + apt install -y intel-oneapi-mkl-2021.1.1 WARNING: apt does not have a stable CLI interface. Use with caution in scripts. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: intel-oneapi-common-licensing intel-oneapi-common-licensing-2021.3.0 intel-oneapi-common-vars intel-oneapi-compiler-dpcpp-cpp-runtime intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0 intel-oneapi-compiler-shared-common-runtime-2021.3.0 intel-oneapi-compiler-shared-runtime-2021.3.0 intel-oneapi-condaindex intel-oneapi-mkl-common-2021.1.1 intel-oneapi-openmp-2021.3.0 intel-oneapi-openmp-common-2021.3.0 intel-oneapi-tbb intel-oneapi-tbb-2021.3.0 intel-oneapi-tbb-common-2021.3.0 The following NEW packages will be installed: intel-oneapi-common-licensing intel-oneapi-common-licensing-2021.3.0 intel-oneapi-common-vars intel-oneapi-compiler-dpcpp-cpp-runtime intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0 intel-oneapi-compiler-shared-common-runtime-2021.3.0 intel-oneapi-compiler-shared-runtime-2021.3.0 intel-oneapi-condaindex intel-oneapi-mkl-2021.1.1 intel-oneapi-mkl-common-2021.1.1 intel-oneapi-openmp-2021.3.0 intel-oneapi-openmp-common-2021.3.0 intel-oneapi-tbb intel-oneapi-tbb-2021.3.0 intel-oneapi-tbb-common-2021.3.0 0 upgraded, 15 newly installed, 0 to remove and 2 not upgraded. Need to get 473 MB of archives. After this operation, 2,442 MB of additional disk space will be used. Get:1 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-common-licensing-2021.3.0 all 2021.3.0-261 [35.6 kB] Get:2 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-common-licensing all 2021.3.0-261 [2,298 B] Get:3 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-common-vars all 2021.3.0-261 [13.0 kB] Get:4 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-compiler-shared-common-runtime-2021.3.0 all 2021.3.0-3350 [14.6 MB] Get:5 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-condaindex amd64 2021.3.0-159 [675 kB] Get:6 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-openmp-common-2021.3.0 all 2021.3.0-3350 [16.0 kB] Get:7 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-openmp-2021.3.0 amd64 2021.3.0-3350 [120 MB] Get:8 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-compiler-shared-runtime-2021.3.0 amd64 2021.3.0-3350 [5,851 kB] Get:9 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-tbb-common-2021.3.0 all 2021.3.0-511 [21.5 kB] Get:10 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-tbb-2021.3.0 amd64 2021.3.0-511 [2,167 kB] Get:11 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0 amd64 2021.3.0-3350 [129 MB] Get:12 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-compiler-dpcpp-cpp-runtime amd64 2021.3.0-3350 [2,818 B] Get:13 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-mkl-common-2021.1.1 all 2021.1.1-52 [18.6 kB] Get:14 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-tbb amd64 2021.3.0-511 [1,840 B] Get:15 https://apt.repos.intel.com/oneapi all/main amd64 intel-oneapi-mkl-2021.1.1 amd64 2021.1.1-52 [200 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 473 MB in 19s (24.3 MB/s) Selecting previously unselected package intel-oneapi-common-licensing-2021.3.0. (Reading database ... 59173 files and directories currently installed.) Preparing to unpack .../00-intel-oneapi-common-licensing-2021.3.0_2021.3.0-261_all.deb ... Unpacking intel-oneapi-common-licensing-2021.3.0 (2021.3.0-261) ... Selecting previously unselected package intel-oneapi-common-licensing. Preparing to unpack .../01-intel-oneapi-common-licensing_2021.3.0-261_all.deb ... Unpacking intel-oneapi-common-licensing (2021.3.0-261) ... Selecting previously unselected package intel-oneapi-common-vars. Preparing to unpack .../02-intel-oneapi-common-vars_2021.3.0-261_all.deb ... Unpacking intel-oneapi-common-vars (2021.3.0-261) ... Selecting previously unselected package intel-oneapi-compiler-shared-common-runtime-2021.3.0. Preparing to unpack .../03-intel-oneapi-compiler-shared-common-runtime-2021.3.0_2021.3.0-3350_all.deb ... Unpacking intel-oneapi-compiler-shared-common-runtime-2021.3.0 (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-condaindex. Preparing to unpack .../04-intel-oneapi-condaindex_2021.3.0-159_amd64.deb ... Unpacking intel-oneapi-condaindex (2021.3.0-159) ... Selecting previously unselected package intel-oneapi-openmp-common-2021.3.0. Preparing to unpack .../05-intel-oneapi-openmp-common-2021.3.0_2021.3.0-3350_all.deb ... Unpacking intel-oneapi-openmp-common-2021.3.0 (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-openmp-2021.3.0. Preparing to unpack .../06-intel-oneapi-openmp-2021.3.0_2021.3.0-3350_amd64.deb ... Unpacking intel-oneapi-openmp-2021.3.0 (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-compiler-shared-runtime-2021.3.0. Preparing to unpack .../07-intel-oneapi-compiler-shared-runtime-2021.3.0_2021.3.0-3350_amd64.deb ... Unpacking intel-oneapi-compiler-shared-runtime-2021.3.0 (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-tbb-common-2021.3.0. Preparing to unpack .../08-intel-oneapi-tbb-common-2021.3.0_2021.3.0-511_all.deb ... Unpacking intel-oneapi-tbb-common-2021.3.0 (2021.3.0-511) ... Selecting previously unselected package intel-oneapi-tbb-2021.3.0. Preparing to unpack .../09-intel-oneapi-tbb-2021.3.0_2021.3.0-511_amd64.deb ... Unpacking intel-oneapi-tbb-2021.3.0 (2021.3.0-511) ... Selecting previously unselected package intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0. Preparing to unpack .../10-intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0_2021.3.0-3350_amd64.deb ... Unpacking intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0 (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-compiler-dpcpp-cpp-runtime. Preparing to unpack .../11-intel-oneapi-compiler-dpcpp-cpp-runtime_2021.3.0-3350_amd64.deb ... Unpacking intel-oneapi-compiler-dpcpp-cpp-runtime (2021.3.0-3350) ... Selecting previously unselected package intel-oneapi-mkl-common-2021.1.1. Preparing to unpack .../12-intel-oneapi-mkl-common-2021.1.1_2021.1.1-52_all.deb ... Unpacking intel-oneapi-mkl-common-2021.1.1 (2021.1.1-52) ... Selecting previously unselected package intel-oneapi-tbb. Preparing to unpack .../13-intel-oneapi-tbb_2021.3.0-511_amd64.deb ... Unpacking intel-oneapi-tbb (2021.3.0-511) ... Selecting previously unselected package intel-oneapi-mkl-2021.1.1. Preparing to unpack .../14-intel-oneapi-mkl-2021.1.1_2021.1.1-52_amd64.deb ... Unpacking intel-oneapi-mkl-2021.1.1 (2021.1.1-52) ... Setting up intel-oneapi-common-licensing-2021.3.0 (2021.3.0-261) ... Setting up intel-oneapi-condaindex (2021.3.0-159) ... Setting up intel-oneapi-common-vars (2021.3.0-261) ... Setting up intel-oneapi-openmp-common-2021.3.0 (2021.3.0-3350) ... Setting up intel-oneapi-common-licensing (2021.3.0-261) ... Setting up intel-oneapi-mkl-common-2021.1.1 (2021.1.1-52) ... Setting up intel-oneapi-compiler-shared-common-runtime-2021.3.0 (2021.3.0-3350) ... Setting up intel-oneapi-tbb-common-2021.3.0 (2021.3.0-511) ... Setting up intel-oneapi-openmp-2021.3.0 (2021.3.0-3350) ... Setting up intel-oneapi-tbb-2021.3.0 (2021.3.0-511) ... Setting up intel-oneapi-tbb (2021.3.0-511) ... Setting up intel-oneapi-compiler-shared-runtime-2021.3.0 (2021.3.0-3350) ... Setting up intel-oneapi-compiler-dpcpp-cpp-runtime-2021.3.0 (2021.3.0-3350) ... Setting up intel-oneapi-compiler-dpcpp-cpp-runtime (2021.3.0-3350) ... Setting up intel-oneapi-mkl-2021.1.1 (2021.1.1-52) ... + /opt/intel/oneapi/mkl/latest/lib/intel64/libmkl_rt.so Segmentation fault FATAL: While performing build: while running engine: exit status 139 FATAL: While performing build: build image size <= 0 ```
eddelbuettel commented 3 years ago

Wrong repo. This is a helper script which make so promises whatsoevre w.r.t. containers, Rocker or not. Maybe talk to Intel?

FWIW I never saw the point of MKL. Much bigger size, OpenBLAS almost as fast. Good enough for me.

Can we close this?

myoung3 commented 3 years ago

fair enough, sorry for the issue spam