eddelbuettel / rquantlib

R interface to the QuantLib library
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install from ppa:edd/misc leaves RQuantLib.so with undefined symbol QuantLib...GeneralizedBlackScholesProcess...discretizationEEE #89

Closed glycerine closed 7 years ago

glycerine commented 7 years ago

on ubuntu16.04/amd64: (as root b/c it is inside an unprivileged docker container and I could only get x11 working as root for now)

# add-apt-repository ppa:edd/misc
# apt-get update
 A PPA for backports of some of my packages
 More info: https://launchpad.net/~edd/+archive/ubuntu/misc
Press [ENTER] to continue or ctrl-c to cancel adding it
gpg: keyring `/tmp/tmp1n961ls7/secring.gpg' created
gpg: keyring `/tmp/tmp1n961ls7/pubring.gpg' created
gpg: requesting key 4B1D4339 from hkp server keyserver.ubuntu.com
gpg: /tmp/tmp1n961ls7/trustdb.gpg: trustdb created
gpg: key 4B1D4339: public key "Launchpad PPA for Dirk Eddelbuettel" imported
gpg: Total number processed: 1
gpg:               imported: 1  (RSA: 1)
OK
root@a882a850fcf1:~# 
root@a882a850fcf1:~# apt-get update
...

then (scroll to the bottom to see the missing symbol)

root@a882a850fcf1:~# apt-get install r-cran-rquantlib libquantlib0-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following additional packages will be installed:
  autoconf automake autotools-dev build-essential bzip2-doc cdbs debhelper
  dh-strip-nondeterminism dh-translations dpkg-dev fakeroot g++ g++-5
  gcc-4.8-base gettext gettext-base gfortran gfortran-5 icu-devtools intltool
  intltool-debian libalgorithm-diff-perl libalgorithm-diff-xs-perl
  libalgorithm-merge-perl libarchive-zip-perl libasan0 libasprintf-dev
  libasprintf0v5 libblas-common libblas-dev libblas3 libboost-test-dev
  libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev libbz2-dev
  libcurl3 libdpkg-perl libfakeroot libfile-fcntllock-perl
  libfile-stripnondeterminism-perl libgcc-4.8-dev libgettextpo-dev
  libgettextpo0 libgfortran-5-dev libgfortran3 libicu-dev libjpeg-dev
  libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblzma-dev
  libmail-sendmail-perl libncurses5-dev libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpng12-dev libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libquantlib0v5 libreadline-dev
  libreadline6-dev libsigsegv2 libstdc++-4.8-dev libstdc++-5-dev
  libsys-hostname-long-perl libtcl8.6 libtinfo-dev libtk8.6 libunistring0
  littler m4 make po-debconf python python-minimal python-pkg-resources
  python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev
  r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign
  r-cran-kernsmooth r-cran-lattice r-cran-littler r-cran-mass r-cran-matrix
  r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-pkgkitten r-cran-rcpp
  r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended zip
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc libtool devscripts dh-make
  debian-keyring g++-multilib g++-5-multilib gcc-5-doc libstdc++6-5-dbg
  gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib
  gfortran-5-doc libgfortran3-dbg liblapack-doc-man liblapack-doc
  libboost1.58-doc libboost-atomic1.58-dev libboost-chrono1.58-dev
  libboost-context1.58-dev libboost-coroutine1.58-dev
  libboost-date-time1.58-dev libboost-exception1.58-dev
  libboost-filesystem1.58-dev libboost-graph1.58-dev
  libboost-graph-parallel1.58-dev libboost-iostreams1.58-dev
  libboost-locale1.58-dev libboost-log1.58-dev libboost-math1.58-dev
  libboost-mpi1.58-dev libboost-mpi-python1.58-dev
  libboost-program-options1.58-dev libboost-python1.58-dev
  libboost-random1.58-dev libboost-regex1.58-dev
  libboost-serialization1.58-dev libboost-signals1.58-dev
  libboost-system1.58-dev libboost-thread1.58-dev libboost-timer1.58-dev
  libboost-wave1.58-dev libboost1.58-tools-dev libmpfrc++-dev libntl-dev
  icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-4.8-doc
  libstdc++-5-doc tcl8.6 tk8.6 make-doc libmail-box-perl python-doc python-tk
  python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess
  r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-cran-getopt r-cran-inline
The following NEW packages will be installed:
  autoconf automake autotools-dev build-essential bzip2-doc cdbs debhelper
  dh-strip-nondeterminism dh-translations dpkg-dev fakeroot g++ g++-5
  gcc-4.8-base gettext gettext-base gfortran gfortran-5 icu-devtools intltool
  intltool-debian libalgorithm-diff-perl libalgorithm-diff-xs-perl
  libalgorithm-merge-perl libarchive-zip-perl libasan0 libasprintf-dev
  libasprintf0v5 libblas-common libblas-dev libblas3 libboost-test-dev
  libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev libbz2-dev
  libcurl3 libdpkg-perl libfakeroot libfile-fcntllock-perl
  libfile-stripnondeterminism-perl libgcc-4.8-dev libgettextpo-dev
  libgettextpo0 libgfortran-5-dev libgfortran3 libicu-dev libjpeg-dev
  libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 liblzma-dev
  libmail-sendmail-perl libncurses5-dev libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpng12-dev libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libquantlib0-dev libquantlib0v5
  libreadline-dev libreadline6-dev libsigsegv2 libstdc++-4.8-dev
  libstdc++-5-dev libsys-hostname-long-perl libtcl8.6 libtinfo-dev libtk8.6
  libunistring0 littler m4 make po-debconf python python-minimal
  python-pkg-resources python-scour python-six python2.7 python2.7-minimal
  r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster
  r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice
  r-cran-littler r-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet
  r-cran-pkgkitten r-cran-rcpp r-cran-rpart r-cran-rquantlib r-cran-spatial
  r-cran-survival r-doc-html r-recommended zip zlib1g-dev
0 upgraded, 113 newly installed, 0 to remove and 11 not upgraded.
Need to get 120 MB of archives.
After this operation, 587 MB of additional disk space will be used.
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Creating config file /etc/papersize with new version
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Creating config file /etc/R/Renviron with new version
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root@a882a850fcf1:~# R

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(RQuantLib)
Loading required package: RQuantLib
Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object '/usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so':
  /usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so: undefined symbol: _ZN8QuantLib30GeneralizedBlackScholesProcessC1ERKNS_6HandleINS_5QuoteEEERKNS1_INS_18YieldTermStructureEEES9_RKNS1_INS_21BlackVolTermStructureEEERKN5boost10shared_ptrINS_19StochasticProcess1D14discretizationEEE
> 
eddelbuettel commented 7 years ago

Cannot reproduce:

edd@max:~$ R

R version 3.4.0 (2017-04-21) -- "You Stupid Darkness"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

R> library(RQuantLib)
R> q()
Save workspace image? [y/n/c]: n
edd@max:~$ dpkg -l | grep quantlib       # edited out old no-longer installed ones
ii  libquantlib0-dev                                            1.10-1xenial1                               amd64        Quantitative Finance Library -- development package
ii  libquantlib0v5                                              1.10-1xenial1                               amd64        Quantitative Finance Library -- library package
ii  quantlib-examples                                           1.10-1xenial1                               amd64        Quantitative Finance Library -- example binaries
ii  quantlib-refman-html                                        1.8-1                                       all          Quantitative Finance Library -- reference manual in html
edd@max:~$ 

"Works for me".

eddelbuettel commented 7 years ago

And if your problem is 16.04 vs 16.10: .

I maintain a package (well-enough) for Debian, I keep a PPA mostly for myself. If it doesn't work for you well you can execute your money-back guarantee.

Sorry.