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Jadhav-2016-Data-Analysis
Code for analysis on data from Jadhav et al. 2016
GNU General Public License v3.0
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Parametric bootstrap of Fourier coefficients to capture uncertainty in group delay
#79
edeno
closed
7 years ago
0
Eliminate dependencies on data processing module
#78
edeno
closed
7 years ago
0
Use EM to estimate replay speed
#77
edeno
closed
7 years ago
1
Double check that droping NaNs on ripple locked LFPs makes sense and we aren't losing too much data
#76
edeno
closed
7 years ago
0
Deal with symmetry of tetrode pair brain areas
#75
edeno
closed
7 years ago
0
Data structure for area pairs in canonical coherence
#74
edeno
closed
7 years ago
0
Level names not always in same order
#73
edeno
closed
7 years ago
1
Compute group delay on entire session with sliding windows
#72
edeno
closed
7 years ago
0
What to use as pre-ripple baseline?
#71
edeno
closed
7 years ago
1
Fill out Gant chart for Loren
#70
edeno
closed
7 years ago
0
Email Shantanu to get the matclust files for the marked point processes
#69
edeno
closed
7 years ago
0
File HPc_06_04 isn't running on the cluster
#68
edeno
closed
7 years ago
1
Implement canonical coherence on the cluster
#67
edeno
closed
7 years ago
1
Handle perfect predictors in GLM fitting
#66
edeno
closed
7 years ago
1
Implement spectral granger on the cluster
#65
edeno
closed
7 years ago
0
Implement ripple triggered coherence on the cluster code
#64
edeno
closed
7 years ago
1
Implement non-parametric spectral granger
#63
edeno
closed
7 years ago
0
More stable way to compute the matrix inverse in spectral granger?
#62
edeno
closed
7 years ago
0
Use non-parametric version of spectral granger?
#61
edeno
closed
7 years ago
0
Proper way to deal with multiple trials in spectral granger?
#60
edeno
closed
7 years ago
0
Canonical Coherence is sensitive to the number of electrodes in each group
#59
edeno
closed
7 years ago
1
Make sure data is centered in the right axis for canonical coherence
#58
edeno
closed
7 years ago
0
Memoize spectral functions?
#57
edeno
closed
7 years ago
0
Use numpy instead of python lists for input to coherence functions?
#56
edeno
closed
7 years ago
0
Replace print statements with logging module
#55
edeno
closed
7 years ago
0
Degrees of freedom for GLM spline
#54
edeno
closed
7 years ago
1
Linear distance < 0
#53
edeno
closed
7 years ago
1
Exclude reference tetrodes in analysis
#52
edeno
closed
7 years ago
0
Find out why tetrodes marked "riptet" are better for ripple detection
#51
edeno
closed
7 years ago
1
Criterion for neuron exclusion
#50
edeno
closed
7 years ago
1
Add session time categorical to the ripple_info data structure
#49
edeno
closed
8 years ago
0
Compute spectrogram of ripples in ripple band for CA1 tetrodes
#48
edeno
closed
7 years ago
0
Compute coherence by ripple type
#47
edeno
closed
7 years ago
1
Take spectrogram of PFC tetrodes on entire experiment
#46
edeno
closed
7 years ago
0
Compute canonical coherence
#45
edeno
closed
7 years ago
0
Compute spectral granger causality
#44
edeno
closed
7 years ago
0
Which frequencies should we focus on?
#43
edeno
closed
7 years ago
1
Rename data_filter module to data_processing
#42
edeno
closed
8 years ago
0
Make an interactive visualization of the ripple decoding
#41
edeno
closed
7 years ago
0
Are there files in the current dataset we can use for marks
#40
edeno
closed
7 years ago
2
Are the candripples files the consensus ripples from Loren Frank's lab?
#39
edeno
closed
8 years ago
1
Is the encoding model fitting properly?
#38
edeno
closed
8 years ago
1
Add to ripple summary statistics: number of spikes per ripple, number of unique spikes per ripple
#37
edeno
closed
8 years ago
1
Add 1% of firing rate as an offset as a baseline for the conditional intensity
#36
edeno
closed
7 years ago
0
Use clusterless decoding or sorted spikes?
#35
edeno
closed
7 years ago
0
Better model for reverse time trajectory for the ripple decoding
#34
edeno
closed
7 years ago
1
Figure out how they do their referencing
#33
edeno
closed
7 years ago
1
Should we use the Frank lab ripples or the Multitaper ripples
#32
edeno
closed
8 years ago
2
Use ripple detection method of Kay 2016?
#31
edeno
closed
8 years ago
3
Apply spectral analysis to different animal / epoch
#30
edeno
closed
8 years ago
0
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