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edgardomortiz / Captus

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
https://edgardomortiz.github.io/captus.docs/
GNU General Public License v3.0
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Error using MMseqs2 #6

Open veronicamb opened 6 months ago

veronicamb commented 6 months ago

Hello Edgardo,

I'm trying to run MMseqs2 on some of my data and I keep getting this error message:

Traceback (most recent call last): File "/home/FCAM/vbueno/miniconda3/envs/captus/bin/captus_assembly", line 10, in sys.exit(main()) ^^^^^^ File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 1403, in main CaptusAssembly() File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 90, in init getattr(self, args.command)() File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 1061, in extract extract(full_command, args) File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/extract.py", line 574, in extract log.log(f'{"sensitivity":>{mar}}: {bold(args.sensitivity)}') ^^^^^^^^^^^^^^^^ AttributeError: 'Namespace' object has no attribute 'sensitivity'. Did you mean: 'cl_sensitivity'?

Any idea how to fix this?

thank you!

Veronica

edgardomortiz commented 6 months ago

Hi Veronica,

I fixed that issue before, be sure to use version 1.0.0 (installed from bioconda). Or re-clone and refresh the repository if you have more copies cloned elsewhere (if you clone the version there should be 1.0.1).

Edgardo

veronicamb commented 6 months ago

Fantastic!! Thanks Edgardo!