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edgardomortiz / vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
GNU General Public License v3.0
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printing faulty VCF lines #12

Closed noahaus closed 5 years ago

noahaus commented 5 years ago

Hello Edgar,

I have been using the vcf2phylip file and have added a feature to print out the VCF lines that are excluded from the file conversion due to missing data.

the feature simply lists the non informative lines of the input VCF

edgardomortiz commented 5 years ago

Hi, I think is a good idea but it is better to let the user decide if they want to output the lines that fail the filters instead of printing them always, I will implement this function later.

Thanks

Edgardo