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edgarriba / OpenDroneMap

OpenDroneMap is a tool to postprocess small Unmanned Aerial Vehicle (sUAS), balloon, kite, and street view data to geographic data. With the current update, we are adding the ability to create orthophotos from drone, balloon, and kite imagery which has GPS ephemeris. Forked from qwesda/BundlerTools ( https://github.com/qwesda/BundlerTools )
GNU General Public License v3.0
0 stars 0 forks source link

More config errors #9

Closed dakotabenjamin closed 8 years ago

dakotabenjamin commented 8 years ago

On a fresh machine, I cloned the repo and ran ./configure.sh. It failed, so I went into SuperBuild/build, deleted everythin and ran cmake .. && make -j 32 > build.log 2>&1

Check the gist

It seems like pcl finished, but I can't really navigate around this new system.

dakotabenjamin commented 8 years ago

I thin kthe specific error might be here:

CMake Error at /home/dmb2/odm_cmake/SuperBuild/build/catkin/stamp/download-catkin.cmake:9 (file):
  file DOWNLOAD HASH mismatch

    for file: [/home/dmb2/odm_cmake/SuperBuild/download/indigo-devel.zip]
      expected hash: [3878179d2a4e7f4273e09bd49e3d48bc]
        actual hash: [86cdc10ec4800a4afa39fe32ffdb0f80]

make[2]: *** [catkin/stamp/catkin-download] Error 1
make[1]: *** [CMakeFiles/catkin.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
dakotabenjamin commented 8 years ago

Aside: https://gist.github.com/dakotabenjamin/3919eac091c941c380ad#file-build-log-L1686 -- Disabled: gpu nonfree ocl stitching superres ts videostab world

nonfree and stitching need to be enabled

edgarriba commented 8 years ago

still having this issue?

dakotabenjamin commented 8 years ago

Yes, I haven't tried to install since the issue came up.

edgarriba commented 8 years ago

ok, now should be fixed.

dakotabenjamin commented 8 years ago 
Reading package lists... Done
Building dependency tree
Reading state information... Done
jhead is already the newest version.
liblas-bin is already the newest version.
python-pyexiv2 is already the newest version.
python-scipy is already the newest version.
The following packages were automatically installed and are no longer required:
  acl at-spi2-core colord libatk-bridge2.0-0 libatspi2.0-0 libcanberra-gtk3-0
  libcanberra-gtk3-module libcanberra0 libcolord1 libcolorhug1 libexif12
  libgd3 libgphoto2-6 libgphoto2-l10n libgphoto2-port10 libgtk-3-0
  libgtk-3-bin libgtk-3-common libgudev-1.0-0 libgusb2 libieee1284-3
  libnotify-bin libnotify4 libsane libsane-common libtdb1 libvorbisfile3
  libwayland-client0 libwayland-cursor0 libxfont1 libxkbcommon0 libxkbfile1
  notification-daemon sound-theme-freedesktop x11-xkb-utils xfonts-base
  xfonts-encodings xfonts-utils xserver-common xserver-xorg-core
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-- SuperBuild files will be downloaded to: /home/vagrant/odm/SuperBuild/download
-- SuperBuild source files will be extracted to: /home/vagrant/odm/SuperBuild/src
-- SuperBuild source files will be installed to: /home/vagrant/odm/SuperBuild/install
-- SuperBuild binary files will be located to: /home/vagrant/odm/SuperBuild/build
-- OpenCV 2.4.11 not found --- Adding internal version
-- PCL 1.7.2 not found --- Adding internal version
-- Ceres 1.10.0 not found --- Adding internal version
CMake Error at /usr/share/cmake-2.8/Modules/ExternalProject.cmake:1580 (get_property):
  get_property could not find TARGET gflags.  Perhaps it has not yet been
  created.
Call Stack (most recent call first):
  /usr/share/cmake-2.8/Modules/ExternalProject.cmake:1808 (_ep_add_configure_command)
  cmake/External-Ceres.cmake:4 (ExternalProject_Add)
  cmake/ExternalProject-Setup.cmake:15 (include)
  CMakeLists.txt:79 (SETUP_EXTERNAL_PROJECT)

-- GFlags 2.1.2 not found --- Adding internal version
-- OpenGV force build --- Adding internal version
-- OpenSfM force build --- Adding internal version
-- CMVS force build --- Adding internal version
-- Catkin force build --- Adding internal version
-- Ecto force build --- Adding internal version
-- LAStools force build --- Adding internal version
-- Configuring incomplete, errors occurred!
See also "/home/vagrant/odm/SuperBuild/build/CMakeFiles/CMakeOutput.log".
Script finished
dakotabenjamin commented 8 years ago

I think it finished, though, right? despite the error.

dakotabenjamin commented 8 years ago

Tried running it but couldn't import ecto. tried setting the python path, but turns out ecto hadn't been built.

edgarriba commented 8 years ago

Don't think so. The error comes from the fact that gflags target is created after Ceres target which has gflags as a dependency. Only need to create gflags target before Ceres in CMakelists.txt. I'll fix it tomorrow.

dakotabenjamin commented 8 years ago

Looks like a quick fix! I moved it up, it looks like it is working. I'll submit a PR if it finishes successfully

dakotabenjamin commented 8 years ago

That part worked, but I'm still unable to make ceres. The error is enigmatic:

-- Installing: /home/vagrant/odm/SuperBuild/install/include/ceres/internal/fixed_array.h
-- Installing: /home/vagrant/odm/SuperBuild/install/include/ceres/internal/disable_warnings.h
-- Installing: /home/vagrant/odm/SuperBuild/install/include/ceres/internal/config.h
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/CeresTargets.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/CeresTargets-release.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/CeresConfig.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/CeresConfigVersion.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/FindEigen.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/share/Ceres/FindGlog.cmake
-- Installing: /home/vagrant/odm/SuperBuild/install/lib/libceres.a
[ 72%] Completed 'ceres'
[ 72%] Built target ceres
make: *** [all] Error 2
Script finished

from CMakeError.log

Determining if the pthread_create exist failed with the following output:
Change Dir: /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec3169035159/fast"
make[3]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/make -f CMakeFiles/cmTryCompileExec3169035159.dir/build.make CMakeFiles/cmTryCompileExec3169035159.d
make[4]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CMakeFil
Building C object CMakeFiles/cmTryCompileExec3169035159.dir/CheckSymbolExists.c.o
/usr/bin/cc   -fPIC    -o CMakeFiles/cmTryCompileExec3169035159.dir/CheckSymbolExists.c.o   -c /home/vagrant/
ild/build/ceres/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec3169035159
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec3169035159.dir/link.txt --verbose=1
/usr/bin/cc  -fPIC     CMakeFiles/cmTryCompileExec3169035159.dir/CheckSymbolExists.c.o  -o cmTryCompileExec31
dynamic
CMakeFiles/cmTryCompileExec3169035159.dir/CheckSymbolExists.c.o: In function `main':
CheckSymbolExists.c:(.text+0x1b): undefined reference to `pthread_create'
collect2: error: ld returned 1 exit status
make[4]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[4]: *** [cmTryCompileExec3169035159] Error 1
make[3]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: *** [cmTryCompileExec3169035159/fast] Error 2

File /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CheckSymbolExists.c:
/* */
#include <pthread.h>

int main(int argc, char** argv)
{
  (void)argv;
#ifndef pthread_create
  return ((int*)(&pthread_create))[argc];
#else
  (void)argc;
  return 0;
#endif
}

Determining if the function pthread_create exists in the pthreads failed with the following output:
Change Dir: /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec1386438786/fast"
make[3]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/make -f CMakeFiles/cmTryCompileExec1386438786.dir/build.make CMakeFiles/cmTryCompileExec1386438786.d
make[4]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CMakeFil
Building C object CMakeFiles/cmTryCompileExec1386438786.dir/CheckFunctionExists.c.o
/usr/bin/cc   -fPIC -DCHECK_FUNCTION_EXISTS=pthread_create   -o CMakeFiles/cmTryCompileExec1386438786.dir/Che
xists.c.o   -c /usr/share/cmake-2.8/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec1386438786
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec1386438786.dir/link.txt --verbose=1
/usr/bin/cc  -fPIC -DCHECK_FUNCTION_EXISTS=pthread_create    CMakeFiles/cmTryCompileExec1386438786.dir/CheckF
ts.c.o  -o cmTryCompileExec1386438786 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
make[4]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[4]: *** [cmTryCompileExec1386438786] Error 1
make[3]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: *** [cmTryCompileExec1386438786/fast] Error 2

Determining if the include file unordered_map exists failed with the following output:
Change Dir: /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec3050822260/fast"
make[3]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/make -f CMakeFiles/cmTryCompileExec3050822260.dir/build.make CMakeFiles/cmTryCompileExec3050822260.d
make[4]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CMakeFil
Building CXX object CMakeFiles/cmTryCompileExec3050822260.dir/CheckIncludeFile.cxx.o
/usr/bin/c++    -fPIC -fopenmp    -o CMakeFiles/cmTryCompileExec3050822260.dir/CheckIncludeFile.cxx.o -c /hom
dm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CheckIncludeFile.cxx
In file included from /usr/include/c++/4.8/unordered_map:35:0,
                 from /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CheckIncludeFile.cxx:1:
/usr/include/c++/4.8/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support
O C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=
piler options.
 #error This file requires compiler and library support for the \
  ^
make[4]: *** [CMakeFiles/cmTryCompileExec3050822260.dir/CheckIncludeFile.cxx.o] Error 1
make[4]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: *** [cmTryCompileExec3050822260/fast] Error 2

Performing C++ SOURCE FILE Test HAVE_SHARED_PTR_IN_STD_NAMESPACE failed with the following output:
Change Dir: /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec4030429808/fast"
make[3]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/make -f CMakeFiles/cmTryCompileExec4030429808.dir/build.make CMakeFiles/cmTryCompileExec4030429808.d
make[4]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CMakeFil
Building CXX object CMakeFiles/cmTryCompileExec4030429808.dir/src.cxx.o
/usr/bin/c++    -fPIC -fopenmp -DHAVE_SHARED_PTR_IN_STD_NAMESPACE   -o CMakeFiles/cmTryCompileExec4030429808.
.o -c /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:34: error: ‘shared_ptr’ is not a membe
                                  std::shared_ptr<int> int_ptr;
                                  ^
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:50: error: expected primary-expression
t’
                                  std::shared_ptr<int> int_ptr;
                                                  ^
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:50: error: expected ‘;’ before ‘int’
make[4]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[4]: *** [CMakeFiles/cmTryCompileExec4030429808.dir/src.cxx.o] Error 1
make[3]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: *** [cmTryCompileExec4030429808/fast] Error 2

Source file was:
#include <memory>
                               int main() {
                                 std::shared_ptr<int> int_ptr;
                                 return 0;
                               }
Performing C++ SOURCE FILE Test HAVE_SHARED_PTR_IN_TR1_NAMESPACE failed with the following output:
Change Dir: /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp

Run Build Command:/usr/bin/make "cmTryCompileExec2926189506/fast"
make[3]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/make -f CMakeFiles/cmTryCompileExec2926189506.dir/build.make CMakeFiles/cmTryCompileExec2926189506.d
make[4]: Entering directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
/usr/bin/cmake -E cmake_progress_report /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/CMakeFil
Building CXX object CMakeFiles/cmTryCompileExec2926189506.dir/src.cxx.o
/usr/bin/c++    -fPIC -fopenmp -DHAVE_SHARED_PTR_IN_TR1_NAMESPACE   -o CMakeFiles/cmTryCompileExec2926189506.
.o -c /home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’:
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:41: error: ‘std::tr1’ has not been dec
                                    std::tr1::shared_ptr<int> int_ptr;
                                         ^
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:57: error: expected primary-expression
t’
                                    std::tr1::shared_ptr<int> int_ptr;
                                                         ^
/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp/src.cxx:3:57: error: expected ‘;’ before ‘int’
make[4]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[4]: *** [CMakeFiles/cmTryCompileExec2926189506.dir/src.cxx.o] Error 1
make[3]: Leaving directory `/home/vagrant/odm/SuperBuild/build/ceres/CMakeFiles/CMakeTmp'
make[3]: *** [cmTryCompileExec2926189506/fast] Error 2

Source file was:
#include <memory>
                                 int main() {
                                   std::tr1::shared_ptr<int> int_ptr;
                                   return 0;
                                 }
edgarriba commented 8 years ago

what OS and architecture do you have?

dakotabenjamin commented 8 years ago

Ubuntu 14.04

edgarriba commented 8 years ago

Cannot reproduce your error, for me it's working. Are you using a fresh workspace?

edgarriba commented 8 years ago

not sure if this will fix your issue 6459763f7bf9ff7c9d2d82f95918013c4e5911c7

dakotabenjamin commented 8 years ago

No, it doesn't. Posting a gist of the configure.sh log here

E: I ran this on a fresh vagrant box, 64-bit Ubuntu 14.04

edgarriba commented 8 years ago

Could you build the superbuild with make -j1 only for debug ? In the top of your gist there's an error with the hash of cmvs. Maybe it's that.

dakotabenjamin commented 8 years ago 
Scanning dependencies of target opensfm
[ 81%] Creating directories for 'opensfm'
[ 82%] Performing download step (download, verify and extract) for 'opensfm'
-- downloading...
     src='https://github.com/mapillary/OpenSfM/archive/odm-2.zip'
     dst='/home/vagrant/odm/SuperBuild/download/odm-2.zip'
     timeout='none'
-- downloading... done
-- verifying file...
     file='/home/vagrant/odm/SuperBuild/download/odm-2.zip'
-- verifying file... done
-- extracting...
     src='/home/vagrant/odm/SuperBuild/download/odm-2.zip'
     dst='/home/vagrant/odm/SuperBuild/src/opensfm'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 83%] No patch step for 'opensfm'
[ 85%] No update step for 'opensfm'
[ 86%] Performing configure step for 'opensfm'
-- The C compiler identification is GNU 4.8.4
-- The CXX compiler identification is GNU 4.8.4
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- A library with BLAS API found.
-- Found AMD library: /usr/lib/x86_64-linux-gnu/libamd.so
-- Found AMD header in: /usr/include/suitesparse
-- Found CAMD library: /usr/lib/x86_64-linux-gnu/libcamd.so
-- Found CAMD header in: /usr/include/suitesparse
-- Found COLAMD library: /usr/lib/x86_64-linux-gnu/libcolamd.so
-- Found COLAMD header in: /usr/include/suitesparse
-- Found CCOLAMD library: /usr/lib/x86_64-linux-gnu/libccolamd.so
-- Found CCOLAMD header in: /usr/include/suitesparse
-- Found CHOLMOD library: /usr/lib/x86_64-linux-gnu/libcholmod.so
-- Found CHOLMOD header in: /usr/include/suitesparse
-- Found SuiteSparseQR library: /usr/lib/x86_64-linux-gnu/libspqr.so
-- Found SuiteSparseQR header in: /usr/include/suitesparse
-- Found Intel Thread Building Blocks (TBB) library: /usr/lib/libtbb.so, assuming SuiteSparseQR was compiled with TBB.
-- Found Intel Thread Building Blocks (TBB) Malloc library: /usr/lib/libtbbmalloc.so
-- Found SuiteSparse_config library: /usr/lib/x86_64-linux-gnu/libsuitesparseconfig.a
-- Found SuiteSparse_config header in: /usr/include/suitesparse
-- Adding librt: /usr/lib/x86_64-linux-gnu/librt.so to SuiteSparse_config libraries (required on Linux & Unix [not OSX]
if SuiteSparse is compiled with timing).
-- Did not find METIS library (optional SuiteSparse dependency)
-- Found SuiteSparse: TRUE (found version "4.2.1")
-- Found Eigen: /usr/include/eigen3 (found version "3.2.0")
-- Found ceres: /home/vagrant/odm/SuperBuild/install/lib/libceres.a
-- Found Gflags: /usr/include
-- Found Glog: /usr/include
-- Boost version: 1.54.0
-- Found the following Boost libraries:
--   python
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.6")
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- Found NumPy: version "1.8.2" /usr/lib/python2.7/dist-packages/numpy/core/include
-- Configuring done
-- Generating done
-- Build files have been written to: /home/vagrant/odm/SuperBuild/build/opensfm
[ 87%] Performing build step for 'opensfm'
Scanning dependencies of target akaze
[  2%] Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/AKAZE.cpp.o
[  5%] Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/fed.cpp.o
[  7%] Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/nldiffusion_functions.cpp.o
[ 10%] Building CXX object CMakeFiles/akaze.dir/third_party/akaze/lib/utils.cpp.o
Linking CXX static library libakaze.a
[ 10%] Built target akaze
Scanning dependencies of target vl
[ 12%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/svm.c.o
[ 15%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop.c.o
[ 17%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/generic.c.o
[ 20%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/pgm.c.o
[ 23%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/svmdataset.c.o
[ 25%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/homkermap.c.o
[ 28%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/host.c.o
[ 30%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/slic.c.o
[ 33%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/rodrigues.c.o
[ 35%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/covdet.c.o
[ 38%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/imopv_sse2.c.o
[ 41%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop_sse2.c.o
[ 43%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/kmeans.c.o
[ 46%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/fisher.c.o
[ 48%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/lbp.c.o
[ 51%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/aib.c.o
[ 53%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/hog.c.o
[ 56%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/quickshift.c.o
[ 58%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mathop_avx.c.o
[ 61%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/scalespace.c.o
[ 64%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/vlad.c.o
[ 66%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/dsift.c.o
[ 69%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/liop.c.o
[ 71%] Building C object CMakeFiles/vl.dir/third_party/vlfeat/vl/mser.c.o
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edgarriba commented 8 years ago

nice! what did you do?

dakotabenjamin commented 8 years ago

Pulled the most recent commits and changed the cmake call as you suggested.

On that note, the export call to set the $PYTHONPATH does not set it globally unless I source the configure script.

So I set the python path manually to :/home/vagrant/odm/SuperBuild/install/lib/python2.7/dist-packages and tried run.py, but I got the following: 

vagrant@vagrant-ubuntu-trusty-64:~/odm$ python run.py -h
Traceback (most recent call last):
  File "run.py", line 4, in <module>
    import ecto
  File "/home/vagrant/odm/SuperBuild/install/lib/python2.7/dist-packages/ecto/__init__.py", line 30, in <module>
    from ecto.ecto_main import _cell_base, _cell_cpp, __getitem_list__, __getitem_slice__, __getitem_str__, __getitem_tu
ple__, lookup
ImportError: libecto.so.0.6: cannot open shared object file: No such file or directory

libecto.so.0.6 is found in SuperBuild/install/lib

edgarriba commented 8 years ago

we need to add SuperBuild/lib to the LD_LIBRARY_PATH.

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/vagrant/odm/SuperBuild/install/lib

in the documentation we have to specify that the user must add the SuperBuild path to the PYTHONPATH and LD_LIBRARY_PATH

dakotabenjamin commented 8 years ago

Ok. I think that is acceptable.

dakotabenjamin commented 8 years ago

Well the config problems are resolved and I'm running a test set right now. Thanks for the help with this :bow:

edgarriba commented 8 years ago

cool! you're welcome! :+1: