Open dzolier opened 3 years ago
You will have to open your Binsanity-profile script and add the parameter "-p" in line 31 to allow the script to forward the command to featureCounts to be able to read paired-end reads. It will work. Because the script of Binsanity-profile is not prompting the featureCounts script to read paired reads.
QC'ed the reads with illumina-utils (specifically iu-filter-quality-minoche and iu-merge pairs in two different attempts), performed preliminary binning with MegaHIT; feedback at the end was as in the title. Example:
Binsanity-profile -i minoche_CONTIGS/contigs.fa -s minoche_MAPPING/ -c Binsanity_minoche/MEGAHIT_coverage --transform scale -T 1 -o Binsanity_minoche_2/
\============================================================================//
ERROR: Paired-end reads were detected in single-end read library : minoche_MAPPING/SRR492065.bam