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edgraham / GhostKoalaParser

Parser for Ghost Koala
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anvi-import-functions doesn't accept e-value of "-" #4

Closed brymerr921 closed 6 years ago

brymerr921 commented 6 years ago

When running KEGG-to-anvio on combined KEGG and InterProScan annotations, the resulting output file has some rows where the e-value is "-". The script anvi-import-functions doesn't like this, as it expects all entries in this column should be floats. I think the InterProScan parser built into anvi-import-functions converts all "-" in the e-value column to 0.

edgraham commented 6 years ago

This is fixed now, a couple of the interproscan databases don't output E-values so I've now set it to replace any null value with a 0.