Blank file when generating KEGG orthology table according to guide

edgraham / GhostKoalaParser

Parser for Ghost Koala

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Blank file when generating KEGG orthology table according to guide #8

Closed kevinxchan closed 5 years ago

kevinxchan commented 6 years ago

Hi, I'm interested in generating the KEGG orthology table used in the guide (and in this repo) myself, but the command to get the .keg file appears to be broken. Specifically, the line

wget 'http://www.genome.jp/kegg-bin/download_htext?htext=ko00000.keg&format=htext&filedir=' -O ko00000.keg

gives me a blank .keg file. Is this link outdated? If so, could you please tell me which URL I should be using? Thanks.

elzerac commented 5 years ago

I found that I could just manually download the htext file here: https://www.genome.jp/kegg-bin/get_htext?ko00001

kevinxchan commented 5 years ago

Thank you! For future viewers who aren't as quick as me, there is an option on the top menu named Download htext where you can download it manually.