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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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fmriprep cifti files vs ciftify cifti files? #128

Open dkp opened 4 years ago

dkp commented 4 years ago

Sorry, this is more a question than an issue: Is there a difference between the cifti files that fmriprep can generate, and your cifti files?

Thanks so much,

Dianne

edickie commented 4 years ago

Good question. So the ciftify one's are in a "space" and resolution (and surface-based registration algorithm) as the HCP Pipelines. They are in "fsLR" space with a 32k density. At least earlier - the cifti files that fmriprep was outputting had surfaces in "fsaverage5", a bit of their own thing. But I think Oscar was working on changing that recently..

dkp commented 4 years ago

Thanks, I will ask Oscar then. I never got the fmriprep-ciftify container to run...despite passing in all the freesurfer license info. I guess you didn't see my response to your response?

BTW, I work with someone who came from Rotman, Aneta Kielar....she pointed out you were from Rotman.

-Dianne

From: Erin W Dickie notifications@github.com Sent: Thursday, November 14, 2019 12:35 PM To: edickie/ciftify ciftify@noreply.github.com Cc: Patterson, Dianne K - (dkp) dkp@email.arizona.edu; Author author@noreply.github.com Subject: Re: [edickie/ciftify] fmriprep cifti files vs ciftify cifti files? (#128)

Good question. So the ciftify one's are in a "space" and resolution (and surface-based registration algorithm) as the HCP Pipelines. They are in "fsLR" space with a 32k density. At least earlier - the cifti files that fmriprep was outputting had surfaces in "fsaverage5", a bit of their own thing. But I think Oscar was working on changing that recently..

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