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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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Issue after ciftify_recon_all #134

Closed renxili closed 4 years ago

renxili commented 4 years ago

Hi, after running ciftify_recon_all to the demo participant sub-50005, I just these following errors. Would you mind taking a look at what might go wrong?

bash-5.0$ ciftify_recon_all --ciftify-work-dir Users/renxili/Desktop/PINT_test/ciftify_demo_01 --fs-subjects-dir /Users/renxili/Desktop/PINT_test/ds000030_R1.0.4/derivatives/freesurfer sub-50005 /Users/renxili/opt/anaconda3/lib/python3.7/site-packages/ciftify/utils.py:286: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, as the default Loader is unsafe. Please read https://msg.pyyaml.org/load for full details. config = yaml.load(yaml_stream) cmd: mris_convert /Users/renxili/Desktop/PINT_test/ds000030_R1.0.4/derivatives/freesurfer/sub-50005/surf/lh.white /Users/renxili/Users/renxili/Desktop/PINT_test/ciftify_demo_01/sub-50005/T1w/Native/sub-50005.L.white.native.surf.gii Failed with returncode -6 dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib

Best, Renxi