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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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Does ciftify_recon_all only accept output from freesurfer? #136

Closed renxili closed 4 years ago

renxili commented 4 years ago

Hi:

Our team is using CONN tool box under Matlab to process the anatomical images, which gives an output in nifti format. Does ciftify_recon_all only accept output from freesurfer? Can we convert such CONN output to the cifti format?

Best, Renxi

edickie commented 4 years ago

I haven't worked with CONN before - so I don't know exactly, but ciftify_recon_all does have a lot of "hard-coded" assumptions that the input data will follow the file naming conventions and resampling spaces of a freesurfer "recon_all" pipeline output. So I wouldn't expect it to work with another packages outputs.

renxili commented 4 years ago

Thank you!