Made fs2hcp T2 compatible, added in hcp preprocessing scripts

edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

https://edickie.github.io/ciftify/

MIT License

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Closed DESm1th closed 7 years ago

DESm1th commented 7 years ago

fs2hcp will now use the T2 file if the --T2 flag is set and if the file is present in the subject's freesurfer outputs.

hcp_preprocessing.py and its support script filter_hcp.sh have been added.