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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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fmriprep_ciftify BIDS-App does not start #143

Open StephDocTUM opened 3 years ago

StephDocTUM commented 3 years ago

Hi,

running: docker run -ti --rm -v /home/neurolab2/Schreibtisch/Stephan/Programmes/freesurfer/license.txt:/fslicense.txt:ro -v /home/neurolab2/Schreibtisch/Drmed/final_GSP:/data:ro -v /home/neurolab2/Schreibtisch/Drmed/final_ciftify_GSP:/out tigrlab/fmriprep_ciftify:latest /data /out/out participant --participant_label=1 --read-from-derivatives /home/neurolab2/Schreibtisch/Drmed/final_GSP/derivatives --resample-to-T1w32k --anat_only --fs-license /fslicense.txt --n_cpus 4

creates the output folder, but does not continue to produce any output. No errors are shown in the terminal and it is running forever. Any ideas?

Best,