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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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ERROR: metric file for variable 'spherereg' has different number of vertices than the first metric file #146

Closed MeaghanPerdue closed 3 years ago

MeaghanPerdue commented 3 years ago

Hello,

I am running ciftify on legacy data that has been processed in freesurfer v. 5.3 and fmriprep, and I've run into an issue in the step "Concatenating Freesurfer Reg with template to get fs_LR reg":

While running: wb_command -metric-math '(ln(spherereg / sphere) / ln(2))' /tmp/tmpig3apcfz/MNINonLinear/native/sub-401177.L.ArealDistortion_FS.native.shape.gii -var sphere /tmp/tmp0hapbqi2/sphere_pre_va.shape.gii -var spherereg /tmp/tmp0hapbqi2/sphere_reg_va.shape.gii

ERROR: metric file for variable 'spherereg' has different number of vertices than the first metric file

This error has only come up with 1 subject, about 73 other subjects run through the same pipeline have completed successfully. Are there any issues I should be looking for in the freesurfer or fmriprep outputs for this subject?

Thank you! Meaghan

MeaghanPerdue commented 3 years ago

This has been resolved after re-running recon-all on this subject.