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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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adjust func2hcp behaviour to match current hcp pipelines.. #19

Closed edickie closed 6 years ago

edickie commented 6 years ago

From Tim Coalson

The func2hcp.py script uses the -volume-parcel-resampling-generic command that we took out of our pipelines, in order to instead do cubic spline resampling, resolving an issue of it creating a grid pattern in the noise variance (since this command uses a form of linear resampling). We now use -cifti-resample after making a subject-specific subcortical cifti file at the acquired resolution. See here:

https://github.com/Washington-University/Pipelines/blob/master/fMRISurface/scripts/SubcorticalProcessing.sh

edickie commented 6 years ago

done