We got some worry that the --hcp-data-dir flag is not well named (it's not acutally data from the HCP) so we will rename it (and the enviroment variable) and add deprecation warnings to the current version
-deprecation warning if the flag is used
-deprecation warning in the help docs
-help docs will switch to using new flag
New flag is:
--ciftify-working-dir?
--ciftify-data-dir?
We got some worry that the --hcp-data-dir flag is not well named (it's not acutally data from the HCP) so we will rename it (and the enviroment variable) and add deprecation warnings to the current version
-deprecation warning if the flag is used -deprecation warning in the help docs -help docs will switch to using new flag
New flag is: --ciftify-working-dir? --ciftify-data-dir?