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edickie / ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
https://edickie.github.io/ciftify/
MIT License
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Issue running citify_subject_fmri with --FLIRT-to-T1w option #64

Closed NeuroImagingWorld closed 6 years ago

NeuroImagingWorld commented 6 years ago

citify_subject_fmri with --FLIRT-to-T1w as below is giving usage error

_ciftify_subject_fmri --hcp-data-dir ${HCPDIR} --FLIRT-to-T1w func.nii.gz subjid mapname

Error: _Usage: ciftify_subjectfmri [options]

Its running fine without --FLIRT-to-T1w option as below,

_ciftify_subject_fmri --hcp-data-dir ${HCPDIR} func.nii.gz subjid mapname

Can you please suggest if you see any issues

edickie commented 6 years ago

Just to check, are you running the newest version? If you run ciftify_subject_fmri --help do you see the --FLIRT-to-T1w flag.

I ask because it is a newer option. Although, before this flag was added --FLIRT-to-T1w was the default behaviour so it might be that it is working fine for you...

NeuroImagingWorld commented 6 years ago

Hi Erin,

You are right, I don't see --FLIRT-to-T1w in help, I just installed latest version. Will keep you posted if we run into any issues.

 Uninstalling ciftify-1.0.1:
 Successfully uninstalled ciftify-1.0.1
 Successfully installed ciftify-2.0.2

Thanks

NeuroImagingWorld commented 6 years ago

Its working. Thanks