Installation error: conda env create -f uditas_env.yml

[YichaoOU]

Hello,

I keep getting errors at the installation step.

conda env create -f uditas_env.yml
Solving environment: failed

ResolvePackageNotFound: 
  - python-dateutil==2.3=py27_0
  - tbb==4.4_20150728=0
  - matplotlib==2.0.2=py27_2

I deleted the above 3 packages and did conda env create -f uditas_env.yml again.

Solving environment: failed

UnsatisfiableError: The following specifications were found to be in conflict:
  - icu==58.1=1
  - qt==5.6.2=3 -> icu=54
Use "conda info <package>" to see the dependencies for each package.

Then I deleted the above 2 packages and did conda env create -f uditas_env.yml again.

Solving environment: failed

UnsatisfiableError: The following specifications were found to be in conflict:
  - pillow==4.2.1=py27_1 -> python_abi=[build=*_cp27mu] -> pypy[version='<0a0']
  - pyqt==5.6.0=py27_4 -> python_abi=[build=*_cp27mu] -> pypy[version='<0a0']
  - pyqt==5.6.0=py27_4 -> qt=5.6 -> fontconfig[version='>=2.12.4,<3.0a0'] -> freetype[version='>=2.8,<2.9.0a0']
Use "conda info <package>" to see the dependencies for each package.

Any other methods to do the installation?

Thanks, Yichao

[umasstr]

I also get this error. Has anyone found a way around this?

[anitagh]

The revised uditas_env.yml that worked for me.

------------------------------------------------------------------
# This file may be used to create an environment using:
# $ conda env create -f uditas_env.yml
name: uditas_test
channels:
  - defaults
  - anaconda
  - conda-forge
  - bioconda
dependencies:
  - python=2.7.15
  - pysam=0.15.3
  - subprocess32=3.5.4
  - bowtie2=2.3.5.1
  - biopython=1.76
  - matplotlib=2.2.5
  - twobitreader=3.1.7
  - pytest=4.6.4
  - cutadapt=1.18
  - openpyxl=2.4.0
  - samtools=1.7
  - bedtools=2.30.0
  - xlrd=1.2.0
  - pandas=0.24.2
  - pigz=2.5

[eugeniomarco]

I just created a PR with a new environment that solves this issues. It works with the latest code for python 3

[tohsumi-bebio]

It is now working, thank you very much!