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editeodoro / Bbarolo

Bbarolo is a 3D fitting tool to derive the kinematics of galaxies from emission-line observations.
http://editeodoro.github.io/Bbarolo/
GNU General Public License v2.0
32 stars 9 forks source link

fail to import pyBBarolo #37

Open ShanghuoLi opened 4 months ago

ShanghuoLi commented 4 months ago

import pyBBarolo

AttributeError Traceback (most recent call last) Input In [14], in <cell line: 2>() 1 # from pyBBarolo import FitMod3D ----> 2 import pyBBarolo

File ~/anaconda3/lib/python3.9/site-packages/pyBBarolo/init.py:3, in 1 all = ['GalMod','GalWind','FitMod3D','Search','FitMod2D','Ellprof'] ----> 3 from .pyBBarolo import * 4 from ._version import version as version

File ~/anaconda3/lib/python3.9/site-packages/pyBBarolo/pyBBarolo.py:25, in 23 import os,sys 24 import numpy as np ---> 25 from .BB_interface import libBB 26 from astropy.io import fits 29 def reshapePointer (p, shape):

File ~/anaconda3/lib/python3.9/site-packages/pyBBarolo/BB_interface.py:43, in 39 array_1d_double = ndpointer(dtype=np.double, ndim=1,flags="CONTIGUOUS") 42 # Class Cube interface ################################################################# ---> 43 libBB.Cube_new.restype = c_void_p 44 libBB.Cube_new.argtypes = [c_char_p] 45 libBB.Cube_delete.restype = None

File ~/anaconda3/lib/python3.9/ctypes/init.py:395, in CDLL.getattr(self, name) 393 if name.startswith('') and name.endswith(''): 394 raise AttributeError(name) --> 395 func = self.getitem(name) 396 setattr(self, name, func) 397 return func

File ~/anaconda3/lib/python3.9/ctypes/init.py:400, in CDLL.getitem(self, name_or_ordinal) 399 def getitem(self, name_or_ordinal): --> 400 func = self._FuncPtr((name_or_ordinal, self)) 401 if not isinstance(name_or_ordinal, int): 402 func.name = name_or_ordinal

AttributeError: dlsym(0x30884a6e0, Cube_new): symbol not found

editeodoro commented 4 months ago

Hello, it looks like the library is not correctly compiled. How did you install pyBBarolo?

ShanghuoLi commented 4 months ago

I just follow the your github.

./configure make make install make pybbinst

Here is all the infomation of the installation.

./confiure checking build system type... arm-apple-darwin22.6.0 checking whether to compile using MPI... no checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed configure: WARNING: No MPI compiler found, won't use MPI. checking whether the compiler supports GNU C++... (cached) yes checking whether g++ accepts -g... (cached) yes checking for g++ option to enable C++11 features... (cached) none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for install... install checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for iostream... yes checking for fstream... yes checking for _Bool... no checking for stdbool.h that conforms to C99... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for g++ option to support OpenMP... unsupported checking for ranlib... ranlib configure: Using darwin build option configure: LIBDIRS checking for /usr/lib... yes checking for /usr/local/lib... no checking for /local/lib... no checking for /opt/local/lib... yes checking for /opt/homebrew/lib... yes configure: -- CFITSIO -- checking for /usr/include/fitsio.h... no checking for /usr/include/cfitsio/fitsio.h... no checking for /usr/local/include/fitsio.h... no checking for /usr/local/include/cfitsio/fitsio.h... no checking for /opt/local/include/fitsio.h... yes checking for recv in -lsocket... no checking for ffopen in -lcfitsio... yes configure: CFITSIO appears to be available. checking for /usr/lib/libcfitsio.a... no checking for /usr/lib/cfitsio/libcfitsio.a... no checking for /usr/local/lib/libcfitsio.a... no checking for /usr/local/lib/cfitsio/libcfitsio.a... no checking for /local/lib/libcfitsio.a... no checking for /local/lib/cfitsio/libcfitsio.a... no checking for /opt/local/lib/libcfitsio.a... yes configure: -- FFTW3 -- checking for /usr/include/fftw3.h... no checking for /usr/local/include/fftw3.h... no checking for /opt/local/include/fftw3.h... no checking for /opt/homebrew/include/fftw3.h... yes checking for fftw_execute in -lfftw3... yes configure: FFTW3LIB appears to be available. checking for /usr/lib/libfftw3.a... no checking for /usr/lib/fftw3/libfftw3.a... no checking for /usr/lib/fftw3lib/libfftw3.a... no checking for /usr/local/lib/libfftw3.a... no checking for /usr/local/lib/fftw3/libfftw3.a... no checking for /usr/local/lib/fftw3lib/libfftw3.a... no checking for /local/lib/libfftw3.a... no checking for /local/lib/fftw3/libfftw3.a... no checking for /local/lib/fftw3lib/libfftw3.a... no checking for /opt/local/lib/libfftw3.a... no checking for /opt/local/lib/fftw3/libfftw3.a... no checking for /opt/local/lib/fftw3lib/libfftw3.a... no checking for /opt/homebrew/lib/libfftw3.a... yes configure: -- WCSLIB -- checking for /usr/include/wcslib/wcs.h... no checking for /usr/local/include/wcslib/wcs.h... no checking for /opt/local/include/wcslib/wcs.h... no checking for /opt/homebrew/include/wcslib/wcs.h... yes checking for wcss2p in -lwcs... yes configure: WCSLIB appears to be available. checking for /usr/lib/libwcs.a... no checking for /usr/lib/wcs/libwcs.a... no checking for /usr/lib/wcslib/libwcs.a... no checking for /usr/local/lib/libwcs.a... no checking for /usr/local/lib/wcs/libwcs.a... no checking for /usr/local/lib/wcslib/libwcs.a... no checking for /local/lib/libwcs.a... no checking for /local/lib/wcs/libwcs.a... no checking for /local/lib/wcslib/libwcs.a... no checking for /opt/local/lib/libwcs.a... no checking for /opt/local/lib/wcs/libwcs.a... no checking for /opt/local/lib/wcslib/libwcs.a... no checking for /opt/homebrew/lib/libwcs.a... yes configure: -- PYTHON -- checking for python... /Users/li/anaconda3/bin/python checking for python version... 3.9 checking for python platform... darwin checking for python script directory... ${prefix}/lib/python3.9/site-packages checking for python extension module directory... ${exec_prefix}/lib/python3.9/site-packages checking for python3.9-config... /Users/li/anaconda3/bin/python3.9-config checking python include flags... -I/Users/li/anaconda3/include/python3.9 -I/Users/li/anaconda3/include/python3.9 checking python lib flags... -L/Users/li/anaconda3/lib/python3.9/config-3.9-darwin -ldl -framework CoreFoundation checking for module matplotlib in python... yes checking for module astropy in python... yes configure: -- GNUPLOT -- checking for gnuplot... yes configure: creating ./config.status config.status: creating Makefile configure:

Configuration Summary: Operating System: darwin22.6.0 Compiler: g++ Source directory: /Applications/Bbarolo/src Target directory: /usr/local CFITSIO library: -L/opt/local/lib -lcfitsio CFITSIO headers: -I/opt/local/include FFTW3 library: -L/opt/homebrew/lib -lfftw3 FFTW3 headers: -I/opt/homebrew/include WCS library: -L/opt/homebrew/lib -lwcs WCS headers: -I/opt/homebrew/include Have Gnuplot: -DHAVE_GNUPLOT Have Python: -DHAVE_PYTHON

configure:

CONGRATULATIONS!

It seems your computer has the needed to compile BBarolo! Now type "make" and pray to your favoured God.

make mkdir -p /Applications/Bbarolo/src/Build g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/BB_interface.cpp -o /Applications/Bbarolo/src/Build/BB_interface.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Arrays/cube.cpp -o /Applications/Bbarolo/src/Build/cube.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Arrays/header.cpp -o /Applications/Bbarolo/src/Build/header.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Arrays/image.cpp -o /Applications/Bbarolo/src/Build/image.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Arrays/param.cpp -o /Applications/Bbarolo/src/Build/param.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Arrays/stats.cpp -o /Applications/Bbarolo/src/Build/stats.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/detection.cpp -o /Applications/Bbarolo/src/Build/detection.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/object2D.cpp -o /Applications/Bbarolo/src/Build/object2D.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/object3D.cpp -o /Applications/Bbarolo/src/Build/object3D.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/objectgrower.cpp -o /Applications/Bbarolo/src/Build/objectgrower.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/scan.cpp -o /Applications/Bbarolo/src/Build/scan.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Map/voxel.cpp -o /Applications/Bbarolo/src/Build/voxel.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/conv2D.cpp -o /Applications/Bbarolo/src/Build/conv2D.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/converter.cpp -o /Applications/Bbarolo/src/Build/converter.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/fitsUtils.cpp -o /Applications/Bbarolo/src/Build/fitsUtils.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/interpolation.cpp -o /Applications/Bbarolo/src/Build/interpolation.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/lsqfit.cpp -o /Applications/Bbarolo/src/Build/lsqfit.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/paramguess.cpp -o /Applications/Bbarolo/src/Build/paramguess.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/progressbar.cpp -o /Applications/Bbarolo/src/Build/progressbar.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/statistics.cpp -o /Applications/Bbarolo/src/Build/statistics.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/string.cpp -o /Applications/Bbarolo/src/Build/string.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/utils.cpp -o /Applications/Bbarolo/src/Build/utils.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Utilities/wcsUtils.cpp -o /Applications/Bbarolo/src/Build/wcsUtils.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/ellprof.cpp -o /Applications/Bbarolo/src/Build/ellprof.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galfit.cpp -o /Applications/Bbarolo/src/Build/galfit.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galfit_errors.cpp -o /Applications/Bbarolo/src/Build/galfit_errors.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galfit_min.cpp -o /Applications/Bbarolo/src/Build/galfit_min.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galfit_out.cpp -o /Applications/Bbarolo/src/Build/galfit_out.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galmod.cpp -o /Applications/Bbarolo/src/Build/galmod.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/galwind.cpp -o /Applications/Bbarolo/src/Build/galwind.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/moment.cpp -o /Applications/Bbarolo/src/Build/moment.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/ringmodel.cpp -o /Applications/Bbarolo/src/Build/ringmodel.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/search.cpp -o /Applications/Bbarolo/src/Build/search.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/slitfit.cpp -o /Applications/Bbarolo/src/Build/slitfit.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/smooth3D.cpp -o /Applications/Bbarolo/src/Build/smooth3D.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS -MMD -c /Applications/Bbarolo/src/Tasks/spacepar.cpp -o /Applications/Bbarolo/src/Build/spacepar.o -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -flto -o BBarolo -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include /Applications/Bbarolo/src/bbarolo.cpp /Applications/Bbarolo/src/Build/BB_interface.o /Applications/Bbarolo/src/Build/cube.o /Applications/Bbarolo/src/Build/header.o /Applications/Bbarolo/src/Build/image.o /Applications/Bbarolo/src/Build/param.o /Applications/Bbarolo/src/Build/stats.o /Applications/Bbarolo/src/Build/detection.o /Applications/Bbarolo/src/Build/object2D.o /Applications/Bbarolo/src/Build/object3D.o /Applications/Bbarolo/src/Build/objectgrower.o /Applications/Bbarolo/src/Build/scan.o /Applications/Bbarolo/src/Build/voxel.o /Applications/Bbarolo/src/Build/conv2D.o /Applications/Bbarolo/src/Build/converter.o /Applications/Bbarolo/src/Build/fitsUtils.o /Applications/Bbarolo/src/Build/interpolation.o /Applications/Bbarolo/src/Build/lsqfit.o /Applications/Bbarolo/src/Build/paramguess.o /Applications/Bbarolo/src/Build/progressbar.o /Applications/Bbarolo/src/Build/statistics.o /Applications/Bbarolo/src/Build/string.o /Applications/Bbarolo/src/Build/utils.o /Applications/Bbarolo/src/Build/wcsUtils.o /Applications/Bbarolo/src/Build/ellprof.o /Applications/Bbarolo/src/Build/galfit.o /Applications/Bbarolo/src/Build/galfit_errors.o /Applications/Bbarolo/src/Build/galfit_min.o /Applications/Bbarolo/src/Build/galfit_out.o /Applications/Bbarolo/src/Build/galmod.o /Applications/Bbarolo/src/Build/galwind.o /Applications/Bbarolo/src/Build/moment.o /Applications/Bbarolo/src/Build/ringmodel.o /Applications/Bbarolo/src/Build/search.o /Applications/Bbarolo/src/Build/slitfit.o /Applications/Bbarolo/src/Build/smooth3D.o /Applications/Bbarolo/src/Build/spacepar.o -L/opt/homebrew/lib -lfftw3 -L/opt/local/lib -lcfitsio -L/opt/homebrew/lib -lwcs -lm -DHAVE_GNUPLOT -DHAVE_FFTW3 -DHAVE_PYTHON -DMACOS

sudo make install install -d -m 2755 /usr/local/bin cp BBarolo BBarolo-1.7 rm -f /usr/local/bin/BBarolo /usr/local/bin/BBarolo-1.7 install -m 755 BBarolo-1.7 /usr/local/bin ln -s /usr/local/bin/BBarolo-1.7 /usr/local/bin/BBarolo rm -f BBarolo-1.7

make pybbinst ar cq libBBarolo-1.7.a /Applications/Bbarolo/src/Build/BB_interface.o /Applications/Bbarolo/src/Build/cube.o /Applications/Bbarolo/src/Build/header.o /Applications/Bbarolo/src/Build/image.o /Applications/Bbarolo/src/Build/param.o /Applications/Bbarolo/src/Build/stats.o /Applications/Bbarolo/src/Build/detection.o /Applications/Bbarolo/src/Build/object2D.o /Applications/Bbarolo/src/Build/object3D.o /Applications/Bbarolo/src/Build/objectgrower.o /Applications/Bbarolo/src/Build/scan.o /Applications/Bbarolo/src/Build/voxel.o /Applications/Bbarolo/src/Build/conv2D.o /Applications/Bbarolo/src/Build/converter.o /Applications/Bbarolo/src/Build/fitsUtils.o /Applications/Bbarolo/src/Build/interpolation.o /Applications/Bbarolo/src/Build/lsqfit.o /Applications/Bbarolo/src/Build/paramguess.o /Applications/Bbarolo/src/Build/progressbar.o /Applications/Bbarolo/src/Build/statistics.o /Applications/Bbarolo/src/Build/string.o /Applications/Bbarolo/src/Build/utils.o /Applications/Bbarolo/src/Build/wcsUtils.o /Applications/Bbarolo/src/Build/ellprof.o /Applications/Bbarolo/src/Build/galfit.o /Applications/Bbarolo/src/Build/galfit_errors.o /Applications/Bbarolo/src/Build/galfit_min.o /Applications/Bbarolo/src/Build/galfit_out.o /Applications/Bbarolo/src/Build/galmod.o /Applications/Bbarolo/src/Build/galwind.o /Applications/Bbarolo/src/Build/moment.o /Applications/Bbarolo/src/Build/ringmodel.o /Applications/Bbarolo/src/Build/search.o /Applications/Bbarolo/src/Build/slitfit.o /Applications/Bbarolo/src/Build/smooth3D.o /Applications/Bbarolo/src/Build/spacepar.o ranlib libBBarolo-1.7.a g++ -O2 -ftree-vectorize -fPIC -Wuninitialized -std=c++17 -flto -fPIC -dynamiclib -single_module -compatibility_version 1.7 -current_version 1.7 -I/Applications/Bbarolo/src -I/opt/homebrew/include -I/opt/local/include -I/opt/homebrew/include -L/opt/homebrew/lib -lfftw3 -L/opt/local/lib -lcfitsio -L/opt/homebrew/lib -lwcs -lm -o libBBarolo.dylib.1.7 /Applications/Bbarolo/src/Build/BB_interface.o /Applications/Bbarolo/src/Build/cube.o /Applications/Bbarolo/src/Build/header.o /Applications/Bbarolo/src/Build/image.o /Applications/Bbarolo/src/Build/param.o /Applications/Bbarolo/src/Build/stats.o /Applications/Bbarolo/src/Build/detection.o /Applications/Bbarolo/src/Build/object2D.o /Applications/Bbarolo/src/Build/object3D.o /Applications/Bbarolo/src/Build/objectgrower.o /Applications/Bbarolo/src/Build/scan.o /Applications/Bbarolo/src/Build/voxel.o /Applications/Bbarolo/src/Build/conv2D.o /Applications/Bbarolo/src/Build/converter.o /Applications/Bbarolo/src/Build/fitsUtils.o /Applications/Bbarolo/src/Build/interpolation.o /Applications/Bbarolo/src/Build/lsqfit.o /Applications/Bbarolo/src/Build/paramguess.o /Applications/Bbarolo/src/Build/progressbar.o /Applications/Bbarolo/src/Build/statistics.o /Applications/Bbarolo/src/Build/string.o /Applications/Bbarolo/src/Build/utils.o /Applications/Bbarolo/src/Build/wcsUtils.o /Applications/Bbarolo/src/Build/ellprof.o /Applications/Bbarolo/src/Build/galfit.o /Applications/Bbarolo/src/Build/galfit_errors.o /Applications/Bbarolo/src/Build/galfit_min.o /Applications/Bbarolo/src/Build/galfitout.o /Applications/Bbarolo/src/Build/galmod.o /Applications/Bbarolo/src/Build/galwind.o /Applications/Bbarolo/src/Build/moment.o /Applications/Bbarolo/src/Build/ringmodel.o /Applications/Bbarolo/src/Build/search.o /Applications/Bbarolo/src/Build/slitfit.o /Applications/Bbarolo/src/Build/smooth3D.o /Applications/Bbarolo/src/Build/spacepar.o rm -rf libBBarolo.dylib libBBarolo.a ln -s libBBarolo.dylib.1.7 libBBarolo.dylib ln -s libBBarolo-1.7.a libBBarolo.a mv libBBarolo-1.7.a /Applications/Bbarolo/src/../pyBBarolo mv libBBarolo.a /Applications/Bbarolo/src/../pyBBarolo mv libBBarolo.dylib.1.7 /Applications/Bbarolo/src/../pyBBarolo mv libBBarolo.dylib /Applications/Bbarolo/src/../pyBBarolo pip install . Processing /Applications/Bbarolo Preparing metadata (setup.py) ... done Building wheels for collected packages: pyBBarolo Building wheel for pyBBarolo (setup.py) ... done Created wheel for pyBBarolo: filename=pyBBarolo-1.3.1-py3-none-any.whl size=3513202 sha256=e2f74d768c20a77a713d3c7a8001ea87e88de28cf13c5e333d74aa5283302c76 Stored in directory: /private/var/folders/s/m2r__lf92jz8jls49m8fqhdn5_hb19/T/pip-ephem-wheel-cache-5z740c1f/wheels/34/67/eb/beb63a83dcb2cd0d4d5b67b6a3cde3fadd96e26efdce7dca65 Successfully built pyBBarolo Installing collected packages: pyBBarolo Attempting uninstall: pyBBarolo Found existing installation: pyBBarolo 1.3.1 Uninstalling pyBBarolo-1.3.1: Successfully uninstalled pyBBarolo-1.3.1 Successfully installed pyBBarolo-1.3.1 rm -rf build dist MANIFEST rm -rf pyBBarolo/BBarolo pyBBarolo/libBB*

editeodoro commented 4 months ago

Sorry, I can not reproduce this error on my machines, so it is difficult to figure out what's happening. It could be that the code is being compiled with the default CLANG on your Mac? The latest versions of this compiler seem to fail in compiling the code correctly. Could you try to recompile the code using the GNU-g++?