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edmcouncil / ontology-publisher

The owl-builder "builds" publishable / deployable versions (and derived products) of a given set of ontologies (such as FIBO)
MIT License
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Problems with robot use in vocabulary product #94

Closed mereolog closed 2 years ago

mereolog commented 2 years ago

Use of robot in https://github.com/edmcouncil/ontology-publisher/blob/34c20ff39b68b787f544338d10ba9c6fa9f1a5fe/publisher/product/vocabulary/build.sh#L51 and in https://github.com/edmcouncil/ontology-publisher/blob/34c20ff39b68b787f544338d10ba9c6fa9f1a5fe/publisher/product/vocabulary/build.sh#L57 consistently gives this error: Could not load imported ontology: <https://www.omg.org/spec/LCC/Languages/LanguageRepresentation/> Cause: Corrupt GZIP trailer See: https://jenkins.edmcouncil.org/job/fibo/job/DER-129/3/consoleFull https://jenkins.edmcouncil.org/job/fibo/job/DER-129/2/consoleFull This is odd since https://www.omg.org/spec/LCC/Languages/LanguageRepresentation/ is resolvable.

A similar situation occurs in the other uses of robot, i.e., when quick versions of FIBO are produced.

przemekgradzki commented 2 years ago

it looks like a java runtime bug used in the current (Apr 11, 2022 at 12:19 pm) ontology-publisher:stable docker image.

I was able to reproduce the error in the current docker image: $ java -version

openjdk version "11.0.14" 2022-01-18 OpenJDK Runtime Environment (build 11.0.14+9-alpine-r0) OpenJDK 64-Bit Server VM (build 11.0.14+9-alpine-r0, mixed mode)

however, after rebuilding the docker image: $ java -version

openjdk version "11.0.15" 2022-04-19 OpenJDK Runtime Environment (build 11.0.15+10-alpine-r0) OpenJDK 64-Bit Server VM (build 11.0.15+10-alpine-r0, mixed mode)

the problem does not occur.

Solution: rebuild and publish the image ontology-publisher:stable

mereolog commented 2 years ago

it looks like a java runtime bug used in the current (Apr 11, 2022 at 12:19 pm) ontology-publisher:stable docker image.

I was able to reproduce the error in the current docker image: $ java -version

openjdk version "11.0.14" 2022-01-18 OpenJDK Runtime Environment (build 11.0.14+9-alpine-r0) OpenJDK 64-Bit Server VM (build 11.0.14+9-alpine-r0, mixed mode)

however, after rebuilding the docker image: $ java -version

openjdk version "11.0.15" 2022-04-19 OpenJDK Runtime Environment (build 11.0.15+10-alpine-r0) OpenJDK 64-Bit Server VM (build 11.0.15+10-alpine-r0, mixed mode)

the problem does not occur.

Solution: rebuild and publish the image ontology-publisher:stable

So go for it.

przemekgradzki commented 2 years ago

Fixed - see https://jenkins.edmcouncil.org/job/fibo/job/master/502/consoleFull