search

edraizen / HistoneDB

Browse all histone sequences by histone varaints
http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0
0 stars 2 forks source link

Analyze Sequences example #118

Open leonardomarino opened 9 years ago

leonardomarino commented 9 years ago

I still do not like the way the Analyze Sequences page looks like. Please see this page http://web.expasy.org/blast/ and notice the behavior that the example has once you click it. Additionally, the button should say Run instead of upload and we should have a reset button as well.

screen shot 2015-09-09 at 3 51 48 pm

anna-panchenko commented 9 years ago

actually we do no need a defline for the sequence in Fasta format.

edraizen commented 9 years ago

Would you like something like this: http://blast.biojs.de/? It is a biojs module and would be easy to implement.

For the current parser, all sequences need a defline in Fasta. Should that be changed?

anna-panchenko commented 9 years ago

It could be changed, if it is not too much trouble (the defline is not necessary). A current default example has a long defline and looks rather complicated.

From: edraizen [mailto:notifications@github.com] Sent: Wednesday, September 09, 2015 10:05 PM To: edraizen/HistoneDB HistoneDB@noreply.github.com Cc: Panchenko, Anna (NIH/NLM/NCBI) [E] panch@ncbi.nlm.nih.gov Subject: Re: [HistoneDB] Analyze Sequences example (#118)

Would you like something like this: http://blast.biojs.de/? It is a biojs module and would be easy to implement.

For the current parser, all sequences need a defline in Fasta. Should that be changed?

— Reply to this email directly or view it on GitHubhttps://github.com/edraizen/HistoneDB/issues/118#issuecomment-139095047.

leonardomarino commented 9 years ago

Let's give it a try. It would be better to use a library or function that automatically detect a sequence format.

Leonardo Mariño-Ramírez marino@marino-johnson.org

---- edraizen wrote ----

Would you like something like this: http://blast.biojs.de/? It is a biojs module and would be easy to implement.

For the current parser, all sequences need a defline in Fasta. Should that be changed?

— Reply to this email directly or view it on GitHub.