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edraizen / HistoneDB

Browse all histone sequences by histone varaints
http://www.ncbi.nlm.nih.gov/projects/HistoneDB2.0
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add user sequence comparison view, reviewer 1 #148

Closed molsim closed 8 years ago

molsim commented 8 years ago

When a query histone sequence is compared to the sequences stored in the database ('Analyze Your Sequence' tab) one of the results is a graphical representation of the alignment of the similar sequences found in the database. However, the query sequence is not included in this representation, which hinders the comparison.

edraizen commented 8 years ago

The query sequence is the sequence aligned to the selected blast hit -- Not the canonical like it is on the other pages. I've made this clear by changing the name to QUERY.

(1) Is this sufficient?

(2) I can show the query sequence as a separate view -- a single sequence in pViz using the features from the HMM classifier only. I can also make the Quick MSA align the selected sequence to the canonical to be consistent with with other pages.

(3) I can also make the quick MSA show three sequences: the query, the canonical, and the blast hit.

Which do you think would be best?

molsim commented 8 years ago

I think what we have now is pretty sufficiency. Great job!