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edroaldo / cellrouter

Reconstruction of complex single-cell trajectories using CellRouter
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mean.p and mean.np stand for? #23

Closed AMA111 closed 5 years ago

AMA111 commented 5 years ago

Dear Colleuge,

I would like to ask about mean.p and mean.np in the differential expression analysis between populations and clusters. Can you please inform me what does they mean? and How have been calculated?

Best, Abdelrahman

edroaldo commented 5 years ago

Thanks for using CellRouter!

mean.p: This is the mean expression of a gene within the cluster reported in the column 'population' mean.np: This is the mean expression of a gene in all other clusters combined.

The way it is calculated is by taking the mean expression of a gene within a cluster (mean.p) and also in all other clusters (mean.np)

Hope it helps!

Thanks!

On Tue, Apr 2, 2019 at 8:36 AM AMA111 notifications@github.com wrote:

Dear Colleuge,

I would like to ask about mean.p and mean.np http://mean.np in the differential expression analysis between populations and clusters. Can you please inform me what does they mean? and How have been calculated?

Best, Abdelrahman

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-- Edroaldo

AMA111 commented 5 years ago

Thank you for that :))