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edroaldo / cellrouter

Reconstruction of complex single-cell trajectories using CellRouter
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processTrajectories #27

Open fengyun198503 opened 5 years ago

fengyun198503 commented 5 years ago

Hi, I met an error when I run processTrajectories. The error is following: Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file 'C:/Users/Desktop/benthany/cellrouter-master/cellrouter-master/Myeloid_Progenitors/results/paths/6.1/Cells_FlowNetwork_all_paths.txt': No such file or directory Called from: file(file, "rt") Browse[1]>

Thank you~ Haichao

edroaldo commented 5 years ago

Hi,

Can you please let me know which commands are you using? I need to know more details about how you are running the analysis. It seems that you are running the tutorial? Do yo have a file names "Cells_FlowNetwork_all_paths.txt" in your paths/6.1 folder?

Thanks!

On Tue, Oct 15, 2019 at 6:04 PM fengyun198503 notifications@github.com wrote:

Hi, I met an error when I run processTrajectories. The error is following: Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file 'C:/Users/weihaichao/Desktop/benthany/cellrouter-master/cellrouter-master/Myeloid_Progenitors/results/paths/6.1/Cells_FlowNetwork_all_paths.txt': No such file or directory Called from: file(file, "rt") Browse[1]>

Thank you~ Haichao

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liangyuli12138 commented 4 years ago

Hi, I get the same problem when i use the processsTrajectories function. just like this : Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") : cannot open file '/public/workspace/lily/CellRouter/result/paths/1.8/Cells_FlowNetwork_all_paths.txt': No such file or directory

And i check the file ,there is no Cells_FlowNetwork_all_paths.txt in 1.8 folder . 1.8 only have three file : CellRouter.sh ; cell_sinks.txt ; cell_sources.txt. and other file such as 1.0 have Cells_FlowNetwork_all_paths.txt, only 1.8 folder does not have. Is the previous step wrong ? Thanks !