Thank you for a very interesting tool for analyzing sc-data!
Trying to run through the tutorial I have come across an issue which seems to be related to java. At first, when running "findPaths" i got the error "No java runtime present, requesting install". Installation of Java Development Kit seemed to resolve this initial issue, however, now leaves me with the following, which i can't get my head around how to fix.
cellrouter <- findPaths(cellrouter, column='cluster', libdir, paste(getwd(), 'results/paths', sep='/'), method="graph")
-------------------Transition: 10.4 -----------------------
1) Computing flow network
Error: Could not find or load main class cellrouter.CellRouter
Running findPaths creates the directories 10.4 (and remaining combinations) with the files cell_skins.txt, cell_sources.txt and CellRouter.sh, but not Cells_FlowNetwork_all_paths.txt which seems to be required for running processTrajectories afterwards.
Have you encountered this issue before and have any ideas how to resolve it?
Thank you for a very interesting tool for analyzing sc-data!
Trying to run through the tutorial I have come across an issue which seems to be related to java. At first, when running "findPaths" i got the error "No java runtime present, requesting install". Installation of Java Development Kit seemed to resolve this initial issue, however, now leaves me with the following, which i can't get my head around how to fix.
Running findPaths creates the directories 10.4 (and remaining combinations) with the files cell_skins.txt, cell_sources.txt and CellRouter.sh, but not Cells_FlowNetwork_all_paths.txt which seems to be required for running processTrajectories afterwards.
Have you encountered this issue before and have any ideas how to resolve it?
Thank you very much, Tobias