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edroaldo / cellrouter

Reconstruction of complex single-cell trajectories using CellRouter
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in Linux -- Could not find or load main class cellrouter.CellRouter #31

Closed xyang2uchicago closed 3 years ago

xyang2uchicago commented 3 years ago

Hi,

I was trying the demon code under Linux with Oracle java, but encounter the R-running issue below: cellrouter <- findPaths(cellrouter, column='label', libdir, paste(ge
-------------------Transition: 12.9 ----------------------- 1) Computing flow network Error: Could not find or load main class cellrouter.CellRouter -------------------Transition: 12.3 ----------------------- 1) Computing flow network Error: Could not find or load main class cellrouter.CellRouter

I tried both R/3.6.3 and R/4.0.3; both met the same error $ java -version java version "1.8.0_92" Java(TM) SE Runtime Environment (build 1.8.0_92-b14) Java HotSpot(TM) 64-Bit Server VM (build 25.92-b14, mixed mode)

Thank you for helping Holly

xyang2uchicago commented 3 years ago

I figured it out: The libdir need to be set correctly. Now, it runs.

Holly