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edwardbirdlab / BALROG-MON

A Nextflow pipeline for Antimicrobial Resistatnce exploration in metagenomic samples
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Add Kegg Pathway validation step #4

Closed molikd closed 5 months ago

molikd commented 1 year ago

https://www.genome.jp/kegg/pathway.html https://www.genome.jp/kegg/mapper/ https://www.genome.jp/tools/kofamkoala/

you'll probably want to add it on as a option, as it will require that the compute node has access to the internet (which some compute resources don't have...)

edwardbirdlab commented 5 months ago

We are moving away from functional metagenomics, and narrowing down the scope to just looking at pathogens, amr, and mobility of amr.