Closed molikd closed 5 months ago
A slight delay should be added before jobs ends, perhaps adjustable, as a ARS HPCs tend to have network congestion around disk writing. So cfg process should have delays in the config.
something akin to
errorStrategy { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' } maxRetries 5
see: https://www.nextflow.io/docs/latest/process.html#dynamic-retry-with-backoff
A slight delay should be added before jobs ends, perhaps adjustable, as a ARS HPCs tend to have network congestion around disk writing. So cfg process should have delays in the config.
something akin to
see: https://www.nextflow.io/docs/latest/process.html#dynamic-retry-with-backoff