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edwardwang1 / LDFormer

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The directory structure of the data #1

Open Ryunosuke-Yanagida opened 1 week ago

Ryunosuke-Yanagida commented 1 week ago

I would like to know the directory structure, file extensions, and naming conventions for the data that need to be prepared. I have read through the paper and understand the structure of the model; however, I would appreciate it if you could provide detailed steps on how to implement the code, including preprocessing code, when running it. The more detailed, the better. Thank you in advance for your help.

edwardwang1 commented 1 week ago

Hi @Ryunosuke-Yanagida,

Thank you for your interest. I have updated the README with some information that can hopefully help you. The code assumes your imaging and structure maps are stored as Python Numpy files. I did not include code on the preprocessing from DICOM to Numpy. I personally used 3DSlicer for this, but you should be able to do this without Slicer as well, and just use Pydicom or something similar.

If you try to run the code and come up with specific errors, I should be able to better assist. Let me know!

Ryunosuke-Yanagida commented 1 week ago

Thank you very much for your prompt response and for updating the README. It is incredibly helpful.

If I encounter any errors or issues, I will reach out again. I appreciate your assistance in advance.

Thank you once again for your support.