```
Dear maintainer,
package sp_1.5-1.tar.gz has been auto-processed. The auto-check found problems when checking the first order strong reverse dependencies.
Please reply-all and explain: Is this expected or do you need to fix anything in your package? If expected, have all maintainers of affected packages been informed well in advance? Are there false positives in our results?
*** Changes to worse in reverse dependencies ***
Debian: [](https://win-builder.r-project.org/incoming_pretest/sp_1.5-1_20221104_083627/reverseDependencies/summary.txt)
Log dir: [](https://win-builder.r-project.org/incoming_pretest/sp_1.5-1_20221104_083627/)
The files will be removed after roughly 7 days.
Pretests:
Windows: [](https://win-builder.r-project.org/incoming_pretest/sp_1.5-1_20221104_083627/Windows/00check.log)
Debian: [](https://win-builder.r-project.org/incoming_pretest/sp_1.5-1_20221104_083627/Debian/00check.log)
Last published version on CRAN:
CRAN Web: [](https://cran.r-project.org/package=sp)
Best regards,
CRAN teams' auto-check service
Package check result: OK
Changes to worse in reverse depends:
Package: antaresViz
Check: tests
New result: ERROR
Running ‘testthat.R’ [70s/65s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(antaresViz)
Loading required package: antaresRead
Loading required package: antaresProcessing
Attaching package: 'antaresProcessing'
The following object is masked from 'package:testthat':
compare
Loading required package: spMaps
Loading required package: sp
Loading required package: raster
Attaching package: 'raster'
The following object is masked from 'package:antaresProcessing':
getValues
The following object is masked from 'package:antaresRead':
readIniFile
Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
GEOS runtime version: 3.11.0-CAPI-1.17.0
Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
GEOS using OverlayNG
Linking to sp version: 1.5-0
Polygon checking: TRUE
>
> test_check("antaresViz")
[ FAIL 1 | WARN 2 | SKIP 13 | PASS 301 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• .runExchangesStackTest is not TRUE (8)
• .runProdStackTest is not TRUE (4)
• .runTsPlotTest is not TRUE (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotXY.R:7'): prodStack, no interactive ────────────────────────
Error in ``$<-.data.frame`(`*tmp*`, "size", value = logical(0))`: replacement has 0 rows, data has 109
Backtrace:
▆
1. └─antaresViz::plotXY(dta, "NODU", "LOAD", precision = 50, sizeOnCount = FALSE) at test-plotXY.R:7:4
2. ├─plotly::ggplotly(p)
3. └─plotly:::ggplotly.ggplot(p)
4. └─plotly::gg2list(...)
5. └─plotly:::layers2traces(data, prestats_data, layout, plot)
6. ├─plotly::to_basic(...)
7. └─plotly:::to_basic.GeomHex(...)
8. ├─base::`$<-`(`*tmp*`, "size", value = ``)
9. └─base::`$<-.data.frame`(`*tmp*`, "size", value = ``)
[ FAIL 1 | WARN 2 | SKIP 13 | PASS 301 ]
Error: Test failures
Execution halted
Package: assignR
Check: tests
New result: ERROR
Running ‘testthat.R’ [30s/45s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(assignR)
> library(raster)
Loading required package: sp
>
> test_check("assignR")
trying URL 'https://wateriso.utah.edu/waterisotopes/media/ArcGrids/CaribSr.zip'
Content type 'application/zip' length 5393557 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-12.7967 -1.9715 -0.2542 1.5077 11.1698
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -44.364528 0.720698 -61.56 <2e-16 ***
isoscape.iso[, 1] 0.462346 0.009185 50.34 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 2.755 on 785 degrees of freedom
Multiple R-squared: 0.7635, Adjusted R-squared: 0.7632
F-statistic: 2534 on 1 and 785 DF, p-value: < 2.2e-16
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-13.4595 -2.0066 0.2084 1.6341 9.1167
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -46.38916 1.19281 -38.89 <2e-16 ***
isoscape.iso[, 1] 0.38651 0.01925 20.08 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 3.292 on 208 degrees of freedom
Multiple R-squared: 0.6598, Adjusted R-squared: 0.6581
F-statistic: 403.3 on 1 and 208 DF, p-value: < 2.2e-16
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-13.7447 -2.0140 -0.3125 1.6166 9.6333
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -45.65484 1.21306 -37.64 <2e-16 ***
isoscape.iso[, 1] 0.39833 0.01961 20.31 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 3.268 on 208 degrees of freedom
Multiple R-squared: 0.6648, Adjusted R-squared: 0.6632
F-statistic: 412.6 on 1 and 208 DF, p-value: < 2.2e-16
NO isoscape values found at the following locations:
-107.8508, 35.1506
-107.8508, 35.1506
-107.8508, 35.1506
-107.8508, 35.1506
-105.2179, 34.5997
-105.2179, 34.5997
-105.2179, 34.5997
-104.5221, 33.4293
-104.5221, 33.4293
-104.5221, 33.4293
-104.4034, 32.8425
-104.4034, 32.8425
-104.4034, 32.8425
-103.4921, 31.4198
-103.4921, 31.4198
-103.4921, 31.4198
-103.3747, 31.8552
-103.3747, 31.8552
-103.3747, 31.8552
-101.4786, 32.25
-101.4786, 32.25
-101.4786, 32.25
-100.4965, 31.4255
-100.4965, 31.4255
-100.4965, 31.4255
-99.1647, 30.0667
-99.1647, 30.0667
-99.1647, 30.0667
-97.6494, 29.6818
-97.6494, 29.6818
-97.6494, 29.6818
-96.5468, 29.706
-96.5468, 29.706
-96.5468, 29.706
-93.2183, 30.1878
-93.2183, 30.1878
-93.2183, 30.1878
-92.4982, 31.2599
-92.5, 31.2599
-92.5, 31.2599
-92.0809, 32.4873
-92.0809, 32.4873
-92.0809, 32.4873
-91.9806, 34.2139
-91.9806, 34.2139
-92.4372, 35.0909
-92.4372, 35.0909
-92.4372, 35.0909
-94.4221, 35.385
-94.4221, 35.385
-94.4221, 35.385
-95.3077, 35.7411
-95.3077, 35.7411
-95.3077, 35.7411
-96.9116, 35.35
-96.9116, 35.35
-97.6182, 35.4572
-97.6182, 35.4572
-97.6182, 35.4572
-101.8308, 35.2219
-101.8308, 35.2219
-101.8308, 35.2219
-102.3475, 36.0606
-102.3475, 36.0606
-102.3475, 36.0606
-104.4409, 36.8926
-104.4409, 36.8926
-104.4409, 36.8926
-104.4409, 36.8926
-105.8527, 37.4675
-105.8527, 37.4675
-105.8527, 37.4675
-105.9917, 38.5362
-105.9917, 38.5362
-106.2921, 39.2487
-106.2921, 39.2487
-106.2921, 39.2487
-107.5534, 40.5127
-107.5534, 40.5127
-107.5534, 40.5127
-112.6385, 45.2164
-112.6385, 45.2164
-112.0379, 46.5888
-112.0379, 46.5888
-112.0379, 46.5888
-111.3211, 47.5077
-111.3211, 47.5077
-111.3211, 47.5077
-112.3336, 48.6375
-112.3336, 48.6375
-112.3336, 48.6375
-112.3336, 48.6375
-106.6374, 48.1936
-106.6374, 48.1936
-106.6374, 48.1936
-103.6255, 48.1582
-103.6255, 48.1582
-103.6255, 48.1582
-99.9956, 48.3686
-99.9956, 48.3686
-99.9956, 48.3686
-96.6102, 47.7812
-96.6102, 47.7812
-96.6102, 47.7812
-94.8809, 47.4717
-94.8809, 47.4717
-94.8809, 47.4717
-92.1663, 46.7373
-92.1663, 46.7373
-92.1663, 46.7373
-92.2502, 43.7484
-92.2502, 43.7484
-92.2502, 43.7484
-92.2502, 43.7484
-92.2502, 43.7484
-92.2502, 43.7484
-89.7415, 43.47
-89.7415, 43.47
-89.2567, 42.1267
-89.2567, 42.1267
-89.2567, 42.1267
-87.5936, 41.7915
-87.5936, 41.7915
-87.5936, 41.7915
-88.4, 40.1883
-88.4, 40.1883
-88.4, 40.1883
-86.5378, 39.1658
-86.5378, 39.1658
-86.5378, 39.1658
-87.5711, 38.021
-87.5711, 38.021
-87.5711, 38.021
-88.5985, 37.0851
-88.5985, 37.0851
-88.5985, 37.0851
-90.4108, 36.7556
-90.4108, 36.7556
-90.4108, 36.7556
-91.778, 37.9389
-91.778, 37.9389
-91.778, 37.9389
-93.206, 37.0237
-93.206, 37.0237
-93.206, 37.0237
-94.8365, 39.7554
-94.8365, 39.7554
-94.8365, 39.7554
-94.8365, 39.7554
-96.5999, 40.7356
-96.5999, 40.7356
-96.5999, 40.7356
-96.5999, 40.7356
-96.5999, 40.7356
-98.0471, 40.9302
-98.0471, 40.9302
-98.0471, 40.9302
-98.0471, 40.9302
-98.0474, 40.9302
-100.5493, 42.8725
-100.5493, 42.8725
-100.5493, 42.8725
-100.5493, 42.8725
-100.5493, 42.8725
-104.4517, 42.7622
-104.4517, 42.7622
-104.4517, 42.7622
-104.4517, 42.7622
-105.3854, 42.7596
-105.3854, 42.7596
-105.3854, 42.7596
-105.3854, 42.7596
-105.3854, 42.7596
-106.3023, 42.8492
-106.3023, 42.8492
-106.3023, 42.8492
-106.3023, 42.8492
-108.73, 42.8331
-108.73, 42.8331
-108.73, 42.8331
-108.73, 42.8331
-108.73, 42.8331
-109.2193, 41.5907
-109.2193, 41.5907
-109.2193, 41.5907
-109.2193, 41.5907
-109.2193, 41.5907
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-13.7447 -2.0140 -0.3125 1.6166 9.6333
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -45.65484 1.21306 -37.64 <2e-16 ***
isoscape.iso[, 1] 0.39833 0.01961 20.31 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 3.268 on 208 degrees of freedom
Multiple R-squared: 0.6648, Adjusted R-squared: 0.6632
F-statistic: 412.6 on 1 and 208 DF, p-value: < 2.2e-16
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-13.7447 -2.0140 -0.3125 1.6166 9.6333
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -45.65484 1.21306 -37.64 <2e-16 ***
isoscape.iso[, 1] 0.39833 0.01961 20.31 <2e-16 ***
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 3.268 on 208 degrees of freedom
Multiple R-squared: 0.6648, Adjusted R-squared: 0.6632
F-statistic: 412.6 on 1 and 208 DF, p-value: < 2.2e-16
---------------------------------------
------------------------------------------
rescale function uses linear regression model,
the summary of this model is:
-------------------------------------------
--------------------------------------
Call:
lm(formula = tissue.iso ~ isoscape.iso[, 1], weights = tissue.iso.wt)
Weighted Residuals:
Min 1Q Median 3Q Max
-5.6731 -2.9061 -0.7152 1.3414 8.0145
Coefficients:
Estimate Std. Error t value Pr(>|t|)
(Intercept) -56.8004 31.0996 -1.826 0.082 .
isoscape.iso[, 1] 0.2577 0.3652 0.706 0.488
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
Residual standard error: 4.038 on 21 degrees of freedom
Multiple R-squared: 0.02316, Adjusted R-squared: -0.02336
F-statistic: 0.4979 on 1 and 21 DF, p-value: 0.4882
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 100 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_processing.R:78'): calRaster works ───────────────────────────
`calRaster(known = d, isoscape = d2h_lrNA, mask = mask_diffProj)` did not produce any warnings.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 100 ]
Error: Test failures
Execution halted
Package: dartR
Check: examples
New result: ERROR
Running examples in ‘dartR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gl.report.hwe
> ### Title: Reports departure from Hardy-Weinberg proportions
> ### Aliases: gl.report.hwe
>
> ### ** Examples
>
> gl.report.hwe(x = bandicoot.gl)
Starting gl.report.hwe
Processing genlight object with SNP data
Error in gl.report.hwe(x = bandicoot.gl) :
Package ggtern needed for this function to work. Please install it.
Execution halted
Package: dartR
Check: package dependencies
New result: NOTE
Package suggested but not available for checking: ‘ggtern’
Package: dynamAedes
Check: re-building of vignette outputs
New result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘dynamAedes_local.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.core
Loading required package: nlme
Loading required package: rpart
spatstat.core 2.4-4
Loading required package: spatstat.linnet
spatstat.linnet 2.3-2
spatstat 2.3-4 (nickname: 'Watch this space')
For an introduction to spatstat, type 'beginner'
Loading required package: sp
Loading required package: gstat
Attaching package: 'gstat'
The following object is masked from 'package:spatstat.core':
idw
Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0 ✔ purrr 0.3.5
✔ tibble 3.1.8 ✔ dplyr 1.0.10
✔ tidyr 1.2.1 ✔ stringr 1.4.1
✔ readr 2.1.3 ✔ forcats 0.5.2
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Loading required package: geosphere
Attaching package: 'geosphere'
The following object is masked from 'package:spatstat.geom':
perimeter
Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
GEOS runtime version: 3.11.0-CAPI-1.17.0
Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
GEOS using OverlayNG
Linking to sp version: 1.5-0
Polygon checking: TRUE
Loading required package: dynamAedes
Loading required package: raster
Attaching package: 'raster'
The following object is masked from 'package:dplyr':
select
The following object is masked from 'package:nlme':
getData
starting worker pid=189841 on localhost:11932 at 17:27:51.802
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment
|
|%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%[1] "No active dispersing females today..."
2000-06-03. Day 1-- of iteration 1 has ended. Population is e: 0 i: 0 a: 4650 d: 0 eh: 0 el: 96587
Max t: 28.528
[1] "No active dispersing females today..."
2000-06-04. Day 2-- of iteration 1 has ended. Population is e: 96587 i: 0 a: 900 d: 0 eh: 0 el: 87383
Max t: 33.067
2000-06-05. Day 3-- of iteration 1 has ended. Population is e: 145106 i: 0 a: 682 d: 0 eh: 0 el: 0
Max t: 33.176
[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-06. Day 4-- of iteration 1 has ended. Population is e: 97461 i: 0 a: 560 d: 0 eh: 0 el: 12502
Max t: 32.396
[1] "No active dispersing females today..."
2000-06-07. Day 5-- of iteration 1 has ended. Population is e: 95240 i: 16739 a: 130 d: 0 eh: 16739 el: 10319
Max t: 29.701
2000-06-08. Day 6-- of iteration 1 has ended. Population is e: 71468 i: 32864 a: 113 d: 0 eh: 19361 el: 0
Max t: 31.715
[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-09. Day 7-- of iteration 1 has ended. Population is e: 46902 i: 39611 a: 94 d: 0 eh: 12574 el: 2425
Max t: 31.506
[1] "No active dispersing females today..."
2000-06-10. Day 8-- of iteration 1 has ended. Population is e: 30477 i: 30838 a: 19 d: 0 eh: 5845 el: 1977
Max t: 33.415
2000-06-11. Day 9-- of iteration 1 has ended. Population is e: 24688 i: 33285 a: 16 d: 0 eh: 8072 el: 0
Max t: 31.558
[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-12. Day 10-- of iteration 1 has ended. Population is e: 14437 i: 18081 a: 7 d: 0 eh: 2207 el: 268
Max t: 34.528
[1] "No active dispersing females today..."
2000-06-13. Day 11-- of iteration 1 has ended. Population is e: 11871 i: 16945 a: 691 d: 0 eh: 4099 el: 144
Max t: 31.783
2000-06-14. Day 12-- of iteration 1 has ended. Population is e: 7309 i: 7955 a: 879 d: 0 eh: 1110 el: 0
Max t: 34.908
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-15. Day 13-- of iteration 1 has ended. Population is e: 6084 i: 7963 a: 1400 d: 0 eh: 2624 el: 8265
Max t: 30.567
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-16. Day 14-- of iteration 1 has ended. Population is e: 11660 i: 8209 a: 1350 d: 0 eh: 1547 el: 17186
Max t: 30.22
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-17. Day 15-- of iteration 1 has ended. Population is e: 19206 i: 704 a: 43 d: 0 eh: 1 el: 0
Max t: 39.83
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-18. Day 16-- of iteration 1 has ended. Population is e: 13670 i: 652 a: 40 d: 0 eh: 597 el: 428
Max t: 32.185
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-19. Day 17-- of iteration 1 has ended. Population is e: 8034 i: 635 a: 33 d: 0 eh: 273 el: 464
Max t: 33.781
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-20. Day 18-- of iteration 1 has ended. Population is e: 4622 i: 1068 a: 24 d: 0 eh: 758 el: 411
Max t: 34.575
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-21. Day 19-- of iteration 1 has ended. Population is e: 4085 i: 1804 a: 17 d: 0 eh: 996 el: 552
Max t: 32.281
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-22. Day 20-- of iteration 1 has ended. Population is e: 3243 i: 1307 a: 7 d: 0 eh: 395 el: 263
Max t: 34.466
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-23. Day 21-- of iteration 1 has ended. Population is e: 2760 i: 1105 a: 6 d: 0 eh: 426 el: 58
Max t: 34.218
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-24. Day 22-- of iteration 1 has ended. Population is e: 2219 i: 1240 a: 15 d: 0 eh: 486 el: 0
Max t: 33.042
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-25. Day 23-- of iteration 1 has ended. Population is e: 1587 i: 1203 a: 12 d: 0 eh: 405 el: 0
Max t: 33.69
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-26. Day 24-- of iteration 1 has ended. Population is e: 1125 i: 1103 a: 16 d: 0 eh: 304 el: 354
Max t: 33.53
[1] "Laying diapausing eggs"
2000-06-27. Day 25-- of iteration 1 has ended. Population is e: 1154 i: 235 a: 9 d: 0 eh: 26 el: 0
Max t: 38.147
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-28. Day 26-- of iteration 1 has ended. Population is e: 1012 i: 460 a: 21 d: 0 eh: 293 el: 0
Max t: 32.12
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-29. Day 27-- of iteration 1 has ended. Population is e: 661 i: 596 a: 22 d: 0 eh: 195 el: 148
Max t: 31.405
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-06-30. Day 28-- of iteration 1 has ended. Population is e: 515 i: 494 a: 19 d: 0 eh: 86 el: 680
Max t: 33.832
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-01. Day 29-- of iteration 1 has ended. Population is e: 1042 i: 343 a: 23 d: 0 eh: 55 el: 300
Max t: 34.434
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-02. Day 30-- of iteration 1 has ended. Population is e: 967 i: 230 a: 27 d: 0 eh: 46 el: 147
Max t: 34.72
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-03. Day 31-- of iteration 1 has ended. Population is e: 905 i: 246 a: 24 d: 0 eh: 75 el: 604
Max t: 32.843
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-04. Day 32-- of iteration 1 has ended. Population is e: 1341 i: 350 a: 38 d: 0 eh: 180 el: 444
Max t: 31.574
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-05. Day 33-- of iteration 1 has ended. Population is e: 1189 i: 224 a: 30 d: 0 eh: 78 el: 287
Max t: 36.498
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-06. Day 34-- of iteration 1 has ended. Population is e: 1243 i: 312 a: 32 d: 0 eh: 136 el: 349
Max t: 33.088
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-07. Day 35-- of iteration 1 has ended. Population is e: 1335 i: 482 a: 23 d: 0 eh: 210 el: 438
Max t: 31.992
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-08. Day 36-- of iteration 1 has ended. Population is e: 1400 i: 606 a: 17 d: 0 eh: 196 el: 277
Max t: 33.313
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-09. Day 37-- of iteration 1 has ended. Population is e: 1302 i: 725 a: 15 d: 0 eh: 196 el: 77
Max t: 33.38
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-10. Day 38-- of iteration 1 has ended. Population is e: 864 i: 554 a: 24 d: 0 eh: 90 el: 0
Max t: 36.124
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-11. Day 39-- of iteration 1 has ended. Population is e: 670 i: 642 a: 33 d: 0 eh: 211 el: 202
Max t: 33.931
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-12. Day 40-- of iteration 1 has ended. Population is e: 602 i: 598 a: 42 d: 0 eh: 130 el: 361
Max t: 35.316
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-13. Day 41-- of iteration 1 has ended. Population is e: 776 i: 634 a: 45 d: 0 eh: 127 el: 719
Max t: 32.632
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-14. Day 42-- of iteration 1 has ended. Population is e: 1224 i: 552 a: 67 d: 0 eh: 47 el: 785
Max t: 34.101
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-15. Day 43-- of iteration 1 has ended. Population is e: 1778 i: 504 a: 81 d: 0 eh: 65 el: 816
Max t: 32.916
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-16. Day 44-- of iteration 1 has ended. Population is e: 2197 i: 525 a: 78 d: 0 eh: 111 el: 1223
Max t: 33.752
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-17. Day 45-- of iteration 1 has ended. Population is e: 3065 i: 729 a: 89 d: 1 eh: 318 el: 1362
Max t: 31.605
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-18. Day 46-- of iteration 1 has ended. Population is e: 3863 i: 1108 a: 90 d: 1 eh: 472 el: 701
Max t: 30.666
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-19. Day 47-- of iteration 1 has ended. Population is e: 2480 i: 676 a: 74 d: 0 eh: 114 el: 867
Max t: 37.596
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-20. Day 48-- of iteration 1 has ended. Population is e: 2760 i: 789 a: 74 d: 0 eh: 305 el: 1068
Max t: 34.574
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-21. Day 49-- of iteration 1 has ended. Population is e: 3343 i: 1359 a: 68 d: 0 eh: 645 el: 556
Max t: 30.584
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-22. Day 50-- of iteration 1 has ended. Population is e: 2965 i: 1674 a: 56 d: 0 eh: 429 el: 1115
Max t: 31.858
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-23. Day 51-- of iteration 1 has ended. Population is e: 3445 i: 2076 a: 75 d: 0 eh: 583 el: 1035
Max t: 30.56
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-24. Day 52-- of iteration 1 has ended. Population is e: 2567 i: 1188 a: 65 d: 0 eh: 144 el: 199
Max t: 37.626
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-25. Day 53-- of iteration 1 has ended. Population is e: 1966 i: 1078 a: 75 d: 0 eh: 256 el: 345
Max t: 35.659
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-26. Day 54-- of iteration 1 has ended. Population is e: 1865 i: 1380 a: 89 d: 0 eh: 452 el: 956
Max t: 32.225
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-27. Day 55-- of iteration 1 has ended. Population is e: 2117 i: 1424 a: 116 d: 0 eh: 330 el: 1095
Max t: 33.831
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-28. Day 56-- of iteration 1 has ended. Population is e: 2678 i: 1528 a: 143 d: 0 eh: 313 el: 1028
Max t: 31.699
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-29. Day 57-- of iteration 1 has ended. Population is e: 3148 i: 1550 a: 165 d: 0 eh: 238 el: 2082
Max t: 31.456
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-30. Day 58-- of iteration 1 has ended. Population is e: 4727 i: 1861 a: 162 d: 0 eh: 496 el: 2219
Max t: 30.678
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-07-31. Day 59-- of iteration 1 has ended. Population is e: 6110 i: 2307 a: 177 d: 0 eh: 677 el: 1791
Max t: 30.967
[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
2000-08-01. Day 60-- of iteration 1 has ended. Population is e: 5573 i: 1892 a: 215 d: 0 eh: 319 el: 1999
Max t: 35.589
########################################
## Iterations concluded. ##
########################################
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_local.Rmd’
--- re-building ‘dynamAedes_punctual.Rmd’ using rmarkdown
Warning in max(cells.coords[, 2]) :
no non-missing arguments to max; returning -Inf
### Model without dispersal ###
starting worker pid=196409 on localhost:11932 at 17:29:04.691
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment
|
|%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%
########################################
## Iterations concluded. ##
########################################
--- finished re-building ‘dynamAedes_punctual.Rmd’
--- re-building ‘dynamAedes_regional.Rmd’ using rmarkdown
inside
Quitting from lines 182-196 (dynamAedes_regional.Rmd)
Error: processing vignette ‘dynamAedes_regional.Rmd’ failed with diagnostics:
error in evaluating the argument ‘obj’ in selecting a method for function ‘coordinates’: package rgdal is required for spTransform methods
--- failed re-building ‘dynamAedes_regional.Rmd’
SUMMARY: processing the following file failed:
‘dynamAedes_regional.Rmd’
Error: Vignette re-building failed.
Execution halted
Package: rangeBuilder
Check: examples
New result: ERROR
Running examples in ‘rangeBuilder-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coordError
> ### Title: Coordinate error
> ### Aliases: coordError
>
> ### ** Examples
>
> data(crotalus)
>
> xy <- crotalus[1:100, c('decimallongitude','decimallatitude')]
>
> coordError(xy)
| | 0 % ~calculating Error in sp::spTransform(pts, CRS("+proj=cea +lon_0=0 +lat_ts=30 +x_0=0 +y_0=0 +ellps=WGS84 +units=m +no_defs")) :
package rgdal is required for spTransform methods
Calls: coordError -> -> FUN -> ->
Execution halted
Package: rbison
Check: tests
New result: ERROR
Running ‘test-all.R’ [4s/4s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library("testthat")
> test_check("rbison")
Loading required package: rbison
[ FAIL 2 | WARN 0 | SKIP 5 | PASS 15 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (5)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-bison.R:4'): bison returns the correct value ───────────────────
Error: lexical error: invalid char in json text.
eyJvY2N1cnJlbmNlcyI6eyJsZWdlbmQ
(right here) ------^
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-bison.R:4:2
2. │ └─cassette$call_block(...)
3. └─rbison::bison(species = "Bison bison", count = 5) at test-bison.R:5:4
4. ├─rbison:::bison_data(...)
5. └─rbison:::bison_GET(...)
6. └─jsonlite::fromJSON(out, FALSE)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
── Error ('test-bisonmap.R:4'): bisonmap returns the correct class ─────────────
Error: lexical error: invalid char in json text.
eyJvY2N1cnJlbmNlcyI6eyJsZWdlbmQ
(right here) ------^
Backtrace:
▆
1. ├─vcr::use_cassette(...) at test-bisonmap.R:4:2
2. │ └─cassette$call_block(...)
3. └─rbison::bison(species = "Aquila chrysaetos", count = 100) at test-bisonmap.R:5:4
4. ├─rbison:::bison_data(...)
5. └─rbison:::bison_GET(...)
6. └─jsonlite::fromJSON(out, FALSE)
7. └─jsonlite:::parse_and_simplify(...)
8. └─jsonlite:::parseJSON(txt, bigint_as_char)
9. └─jsonlite:::parse_string(txt, bigint_as_char)
[ FAIL 2 | WARN 0 | SKIP 5 | PASS 15 ]
Error: Test failures
Execution halted
Package: SRTsim
Check: re-building of vignette outputs
New result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘SRTsim.Rmd’ using rmarkdown
Quitting from lines 26-47 (SRTsim.Rmd)
Error: processing vignette ‘SRTsim.Rmd’ failed with diagnostics:
there is no package called 'BiocFileCache'
--- failed re-building ‘SRTsim.Rmd’
SUMMARY: processing the following file failed:
‘SRTsim.Rmd’
Error: Vignette re-building failed.
Execution halted
```
edzer
commented
2 years ago
We see
Is that because I forgot to merge #121?