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eead-csic-compbio / get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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Can't locate HPCluster.pm #120

Closed stefanielager closed 2 weeks ago

stefanielager commented 3 weeks ago

I have installed get_homologues using bioconda, and installation seem to work well, but when I try to run

get_homologues.pl -d GenomeDB -M -t 0 -n 16

I get error message Can't locate HPCluster.pm ?

eead-csic-compbio commented 3 weeks ago

Hi @stefanielager , I just did a fresh install in my WSL Ubuntu like this:

conda install -c bioconda get_homologues

Then I copied a sample dataset from the repo (https://github.com/eead-csic-compbio/get_homologues/tree/master/sample_plasmids_gbk) and tested the software with:

get_homologues.pl -d github/get_homologues/sample_plasmids_gbk -M -t 0

It worked just fine, so we would need to figure out what's going on on your side. Did you edit the HPCluster.pm by any chance? Is this a linux system?

Bruno

PS I might wait until next week to respond, sorry

stefanielager commented 2 weeks ago

Thank you Bruno,

I managed to locate HPCluster.pm and can now tell get_homologues.pl where to look for it and now it works!

Stefanie