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eead-csic-compbio / get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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compare_cluster.pl fail to extract fasta headers? #26

Closed indexofire closed 6 years ago

indexofire commented 6 years ago

Something wierd after running get_homologues.pl for gbk files(sample_plasmids_gbk and my gbk data all get this errors), compare_cluster.pl was run to get cluster of genes. But some errors showed like this:

errors in v 3.0.8

...
Argument "" isn't numeric in numeric comparison (<=>) at ./compare_clusters.pl line 619.
...

errors in 3.1.2.

...
Use of uninitialized value in hash element at ./compare_clusters.pl line 300.
...
Argument "" isn't numeric in numeric comparison (<=>) at ./compare_clusters.pl line 627.
...

And the *_t0.tab file contained few gene distribution, which will get error msg by running plot_matrix_heatmap.sh.

two different versions were tried, but kind of same errors were displayed. Need help! thanks.

eead-csic-compbio commented 6 years ago

Hi, thanks for reporting this. I haven't been able to reproduce this with sample_plasmids_gbk, can you please post here your exact commands? Cheers, Bruno