Closed TommyH-Tran closed 3 years ago
I have now updated compare_clusters.pl , parse_pangenome_matrix.pl and plot_pancore_matrix.pl in GitHub. Please try them out (git pull) and let us know how that goes, Bruno
Do you have any feedback on this?
I have tried out the compare_clusters.pl and it does make the svg file, however the formatting is a bit messy when opened in illustrator as you can see. Although, this can just be fixed with editing probably.
Pangenome venn pdf venn_t0_Cpro.pdf
Pangenome venn svg
Same issue with the parse_pangenome_matrix.pl command.
Pangenome matrix pdf pangenome_matrix_t0__shell.pdf
Pangenome matrix svg
I have not had time to test plot_pancore_matrix.pl, but I am going to guess it will follow suite.
So it seems that Illustrator has trouble with the fonts of SVG plots. Can't you import the PDFs with illustrator? That might be your work around?
i use pdf2svg for this task:
Hi @TommyH-Tran , scripts plot_matrix_heatmap.sh and hcluster_pangenome_matrix.sh can produce SVG, so I guess you are referring to compare_clusters.pl and/or plot_pancore_matrix.pl? These currently produce PNG and PDF outfiles, but I guess I can modify them to produce SVG as well, I'll let you know, Bruno