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eead-csic-compbio / get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis
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ANI svg #92

Closed TommyH-Tran closed 2 years ago

TommyH-Tran commented 2 years ago

Am I able to get a svg version of the ANI output?

eead-csic-compbio commented 2 years ago

You should be able to do so with plot_matrix_heatmap.sh (SVG is the default format)

TommyH-Tran commented 2 years ago

is there a flag in the ./plot_matrix_heatmap.sh command that allows you to adjust the size of the font of the numbers in the boxes of the ANI heat map?

eead-csic-compbio commented 2 years ago

Hi @TommyH-Tran , there are different options you can try, anything I might have missed @pvinuesa ?

-d <int> maximum number of decimals in matrix display [0-2; def: 0]
-p <integer> points for plotting device            [def 15]    
-H <integer> output device height                  [def 10]    
-W <integer> output device width                   [def 15]     
-X <float> character expansion factor              [def 1.0]