eead-csic-compbio / metagenome_Pfam_score

Protocol for finding informative protein families and then using them to score metagenomic sets.
GNU General Public License v3.0
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error to generate hmm search.tab #3

Open ivanaKraiselburd opened 5 years ago

ivanaKraiselburd commented 5 years ago

Hello!! I get the following error when I run the command:

perl mebs.pl -input Proteins/ -type genomic -fdr 0.01 -comp

ERROR: failed to generate Proteins//Proteins_organism_1.faa.sulfur.hmmsearch.tab

NAIncorrect number of command line arguments.

Usage: hmmsearch [options]

where most common options are: -h : show brief help on version and usage To see more help on available options, do hmmsearch -h

The same happens with all of the files and all the cycles

Thanks, Ivana