I was able to run CirComPara for another set of libraries, but in this view the error below. Can they help with the error?
scons: Reading SConscript files ...
TypeError: 'Entry' object is not iterable:
File "/home/fabiano_d1f49/CirComPara/src/junk2_circpipe_multisample", line 307:
exports = '''env sample_cpus sample_genome_index '''
File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 604:
return method(*args, *kw)
File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 541:
return _SConscript(self.fs, files, **subst_kw)
File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 250:
exec file in call_stack[-1].globals
File "/home/fabiano_d1f49/CirComPara/src/junk2_circpipe", line 285:
sample_raw_reads = [f.abspath for f in unmapped_reads[1]]
egaffo
commented
7 years ago
I was able to run CirComPara for another set of libraries, but in this view the error below. Can they help with the error?
scons: Reading SConscript files ... TypeError: 'Entry' object is not iterable: File "/home/fabiano_d1f49/CirComPara/src/junk2_circpipe_multisample", line 307: exports = '''env sample_cpus sample_genome_index ''' File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 604: return method(*args, *kw) File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 541: return _SConscript(self.fs, files, **subst_kw) File "/home/fabiano_d1f49/CirComPara/tools/scons/scons-local-2.5.0/SCons/Script/SConscript.py", line 250: exec file in call_stack[-1].globals File "/home/fabiano_d1f49/CirComPara/src/junk2_circpipe", line 285: sample_raw_reads = [f.abspath for f in unmapped_reads[1]]