Directory being looked up as File in must_be_same function

egaffo / CirComPara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

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Directory being looked up as File in must_be_same function #6

Closed arodel21 closed 3 years ago

arodel21 commented 3 years ago

Function must_be_same (line 610 from CirComPara/tools/scons/scons-local-3.1.2/Scons/Node/FS.py) tries to look up for file named "ccp_dbs" which is actually a directory, so the function throws error. Another condition needs to be added to must_be_same function to avoid this. My quick fix was to add the following on line 622 in the same file.

elif klass.__name__== 'File' and self.__class__.__name__== 'Dir':
          return

egaffo commented 3 years ago

That's a Scons (source) file , not a script from CirComPara. You probably did not set correct parameters. The full error output plus the parameters you set might help to understand the issue.