Great package. I noticed that the up and down regulated gene colours for the out out of term_gene_path() is opposite to the visualisations produced by run_pathfindR(). i.e. up is green and down is red in term-gene graph but up is red and down is green in visualisations. I wonder if this should be the same for continuity.
Hi there,
Great package. I noticed that the up and down regulated gene colours for the out out of
term_gene_path()
is opposite to the visualisations produced byrun_pathfindR()
. i.e. up is green and down is red in term-gene graph but up is red and down is green in visualisations. I wonder if this should be the same for continuity.Thanks!