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egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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ensembl ID instead of gene_symbol #150

Closed asdfjohnny1 closed 1 year ago

asdfjohnny1 commented 1 year ago

Hello,

I was wondering if it is possible to use ensemble ID instead of gene_symbol when running pathfindR ?

I am getting some inconsistencies due to the gene symbol!

thank you very much in advance.

all the best, Johnny

egeulgen commented 1 year ago

While there's no built-in data to support other IDs, as outlined here, you can use custom gene sets and a custom PIN to be able to use pathfindR with another ID type