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egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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Error in magick_image_composite(image, composite_image, offset, gravity, : rsession: unable to get registry ID `cache:hosts' @ error/registry.c/GetImageRegistry/202 #159

Closed guanyuanm closed 1 year ago

guanyuanm commented 1 year ago

error occur when using "Reactome" in run_pathfindR function, no error when using "KEGG";

egeulgen commented 1 year ago

Hey,

Since this is an issue related to magick, please open an issue on the magick repo

This issue will happen for any other gene set resource other than KEGG, because the visualisation function for these require the package magick.

You may disable these plots by setting visualize_enriched_terms=FALSE when running run_pathfindR()

Best, -E

guanyuanm commented 1 year ago

great, it works, thanks!

On Fri, Mar 24, 2023 at 3:02 AM Ege Ulgen @.***> wrote:

Hey,

Since this is an issue related to magick, please open an issue on the magick repo https://github.com/ropensci/magick/issues

This issue will happen for any other gene set resource other than KEGG, because the visualisation function for these require the package magick.

You may disable these plots by setting visualize_enriched_terms=FALSE when running run_pathfindR()

Best, -E

— Reply to this email directly, view it on GitHub https://github.com/egeulgen/pathfindR/issues/159#issuecomment-1482542416, or unsubscribe https://github.com/notifications/unsubscribe-auth/AGI6GP6B5DUE4ZBQ6CQ33CDW5VWKBANCNFSM6AAAAAAWF4ZFVQ . You are receiving this because you authored the thread.Message ID: @.***>