search

egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
Other
177 stars 25 forks source link

CRAN error #172

Closed egeulgen closed 11 months ago

egeulgen commented 11 months ago

Dear maintainer,

You have file 'pathfindR/man/pathfindR.Rd' with \docType{package}, likely intended as a package overview help file, but without the appropriate PKGNAME-package \alias as per "Documenting packages" in R-exts.

This seems to be the consequence of the breaking change

Using @docType package no longer automatically adds a -package alias. Instead document _PACKAGE to get all the defaults for package documentation.

in roxygen2 7.0.0 (2019-11-12) having gone unnoticed, see https://github.com/r-lib/roxygen2/issues/1491.

As explained in the issue, to get the desired PKGNAME-package \alias back, you should either change to the new approach and document the new special sentinel

"_PACKAGE"

or manually add

@aliases pathfindR-package

if remaining with the old approach.

Please fix in your master sources as appropriate, and submit a fixed version of your package within the next few months.

Best, -k