I discovered the following while playing around with different datasets:
If the exp_mat submitted to score_terms() has Gene_symbols that are partially lowercase, then line 118 in scoring.R will generate an empty matrix even if there are gene overlaps between the exp_mat and the enrichment_table.
It would be good to add that to the documentation or automatically turn the Gene_Symbols in the exp_mat to uppers.
This is an awesome tool! Thanks for making it!
I discovered the following while playing around with different datasets:
If the exp_mat submitted to score_terms() has Gene_symbols that are partially lowercase, then line 118 in scoring.R will generate an empty matrix even if there are gene overlaps between the exp_mat and the enrichment_table.
It would be good to add that to the documentation or automatically turn the Gene_Symbols in the exp_mat to uppers.
Thanks!