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egeulgen / pathfindR

pathfindR: Enrichment Analysis Utilizing Active Subnetworks
https://egeulgen.github.io/pathfindR/
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cannot load pathfindR #29

Closed safrikDut closed 4 years ago

safrikDut commented 4 years ago

Hi! after loading pathfindR:

library("pathfindR") ############################################################################## Welcome to pathfindR!

Please cite the article below if you use pathfindR in published reseach:

Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks. Front. Genet. doi:10.3389/fgene.2019.00858

############################################################################## Error: package or namespace load failed for ‘pathfindR’: .onAttach failed in attachNamespace() for 'pathfindR', details: call: system2(java, "-version", stderr = TRUE, stdout = TRUE) error: '""' not found

Is it an issue with the R version? (3.6.2)

egeulgen commented 4 years ago

It seems that you don't have java installed on your system. Please download and install java from: https://www.java.com/en/

Elseedy28 commented 1 year ago

i have the same problem and i downloaded and i still have the same problem

elcome to pathfindR!

Please cite the article below if you use pathfindR in published reseach:

Ulgen E, Ozisik O, Sezerman OU. 2019. pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks. Front. Genet. doi:10.3389/fgene.2019.00858

############################################################################## Error: le chargement du package ou de l'espace de noms a échoué pour ‘pathfindR’ : .onAttach a échoué dans attachNamespace() pour 'pathfindR', détails : appel : fetch_java_version() erreur : Java version not detected. Please download and install Java from “https://www.java.com/en/”

egeulgen commented 1 year ago

Please configure HOME and JAVA_HOME, as suggested here